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Report for CCDS49512.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49512.1 Public Mus musculus 14 Phf11c 23 108 98 CCDS HistoryNCBI Gene:628705Re-query CCDS DB by CCDS ID:49512.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49512.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166912.2 ENSMUSP00000131536.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166912.2Link to Ensembl Protein Viewer:ENSMUSP00000131536.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166912Re-query CCDS DB by Protein ID:ENSMUSP00000131536
Original member Current member NCBI NM_001164289.1 NP_001157761.1 Accepted alive Link to Nucleotide Sequence:NM_001164289.1Link to Protein Sequence:NP_001157761.1Re-query CCDS DB by Nucleotide ID:NM_001164289Re-query CCDS DB by Protein ID:NP_001157761Link to BLAST:NP_001157761.1

Chromosomal Locations for CCDS 49512.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 59381145 59381147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59381318 59381484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59383311 59383382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59384784 59384915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59385467 59385530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59386281 59386348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59387347 59387396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59389269 59389399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59390866 59390973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59393030 59393254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGGCTCTATCACAAGAAGAGGGTCCTGCCAATTTCTTTAAGACTAGAGGAGCTACCAAGCACATAAAAT
ATGTTTCTGTTTTAACCTGGTTGTTATTTATAGGTTTCTGTCAGCTTACAGAAAAGATGGAAAAAAGAAC
ATGTGCCCTCTGCCCTGAAGGCCATGATTGGAGCGTGATATACTTTGTACCATCAGCTAATATAGCTGCT
CATGAAAACTGTTTGCTGTATTCATCAGGATTGGTGGAATGTGAGGCCCATAATCCATGTAAAATAGCTA
GAAATGTTGATGTGAAATCAGTACTGGAAAGGATCTGGAGAGGAAGCACAATGATATGCTCGTTTTGTAA
TAATGAAGGAGCCATCGTAAGGTGTGGTGAAACATCTTGTGCCAAGAATTACCACTTATTCTGTGCCAAG
GAGGACTACGCAGTTCTACAAGGTGGAGTTACAAGAACTTACAAATTATTTTGCCCAGAACATCCTCCAC
AACAAGAAGAGGCCACTGAAAGTGCTGATGGCCCAAGCATGAAGAGGAAGAGAGGAAGAAAGAAACGCCT
CTCATCAGGCCCTCCTGCACAGCCAAAAGTGGTGAAATTCATGAGATCCAAAAGACATGTGACAGGAGAG
CCTCTCGGCCACAGAGATGCAGCTGTCAAAGCTCCTTTTCTTAAGAAATGCAAGAAAGCAGGACTTCTTA
ATGTTTTACTTGAATACATACTAGAAAAAATGAATTCAATTTATGGAAGACTCCTGGATGAGACTGCCTC
AGAGTCAGACTATGAAGGGATCGAGACCTTACTGTTTGGCTGTGGATTATTTAAAGACACACTAAGAAAA
TTCCAAGAAGTAATCAAGAGTAAAGCTTGTGAATGGGAAGAAAGGCAAAGGCTGATGAAGCAGCAGCTTG
AGGCACTTGCAGACTTACAACAAAGCTTGTGCTCATTTCAAGAAAATGGGGACCTGGACTGCTCAAGTTC
TACATCAGGATCCTTGCTACCTCCTGAGGACCACCAGTAA

Translation (339 aa):
MALSQEEGPANFFKTRGATKHIKYVSVLTWLLFIGFCQLTEKMEKRTCALCPEGHDWSVIYFVPSANIAA
HENCLLYSSGLVECEAHNPCKIARNVDVKSVLERIWRGSTMICSFCNNEGAIVRCGETSCAKNYHLFCAK
EDYAVLQGGVTRTYKLFCPEHPPQQEEATESADGPSMKRKRGRKKRLSSGPPAQPKVVKFMRSKRHVTGE
PLGHRDAAVKAPFLKKCKKAGLLNVLLEYILEKMNSIYGRLLDETASESDYEGIETLLFGCGLFKDTLRK
FQEVIKSKACEWEERQRLMKQQLEALADLQQSLCSFQENGDLDCSSSTSGSLLPPEDHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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