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Report for CCDS30333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30333.1 Public Mus musculus X Magee2 23 108 98 CCDS HistoryNCBI Gene:272790Re-query CCDS DB by CCDS ID:30333.1Re-query CCDS DB by GeneID:272790See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30333.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033575.6 ENSMUSP00000033575.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033575.6Link to Ensembl Protein Viewer:ENSMUSP00000033575.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000033575Re-query CCDS DB by Protein ID:ENSMUSP00000033575
Original member Current member NCBI NM_053206.2 NP_444436.1 Accepted alive Link to Nucleotide Sequence:NM_053206.2Link to Protein Sequence:NP_444436.1Re-query CCDS DB by Nucleotide ID:NM_053206Re-query CCDS DB by Protein ID:NP_444436Link to BLAST:NP_444436.1

Chromosomal Locations for CCDS 30333.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 104855472 104857043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGTCTCTGGTAAGCCAGAATGCGCGCCAAAGCAGCGCAGAGACTACCGCCGATTACAGCAACAGCCAGG
GTGAAATGCAGGCTACTAATGCCTCCGGGCCTGCCACCTCCATGCTAGCCCTCGAAGCTCCCCAGGGCCC
TGAGATTCCAAACGATCCACAGGGAGCCAGCGCTTCCCAGGCTGTGCGGGACCCGAGTGACATCGAGGTT
CTCATCGACGAGCAGTCCCGACGTTTGGGGGCGCTCAGGGTCCACGACCCTCTTGAAGAGAGGTCGGTTG
CTTTAGTGAATTTCATGCGCATGAAAAGCCAAAATGAGGGGTCTATCCGACAGTCAGAAATGCTGGAGTT
TCTCAAAGAATACTCAGATCAGTTCCCTGAGATACTCAGACGAGCCTCAGCTCATCTGGATCGGGTCTTT
GGGTTGAATCTGAGAGTCCTTGATCCTCAGATGGACACTTACAACCTAATCAGCAAACCAGGTCCCCAGA
CCACTGAACGGCTAGCAGAGACCCTGGACATACCAAAAGCGGGTCTCCTGGCCTTGGTCCTAGGCCATAT
TCTCTTGAATGGCAACCGGGCAAGAGAGGCCTCCATTTGGGACCTGCTGTTAAAGGTGGATGTGATAGAT
GGGTCTCAGAGGATCAACAACCAGTTTGGGAACACAAGAAACCTCCTTACTATTGACTTTGTCCATATGC
GATTTTTGGAGTACTGGCCAGTATATGGCACTAATCCCCTTGAATTTGAGTTCCTGTGGGGCTCTAGAGC
TCACAGTGAAATCACAAAGATGGAAGCCCTGAAGTTTGTAGCAGAGGCCCATGATGAAGAACCCTGGAGC
TGGCCAGAAGAATATAACAAAGCTCTGGAAGCTGACAAAGCCAAAGAGAGAAGCCAGGCTGCTGGCTTAG
AGTTCTGGTCAGAGGACACTATGAATGATAAAGCAAATGAATTGGTCCAGTTGGCCATTGGTGTCACTGA
GGAGTTGCTGCCTATCCATCAGGATGAGCTATTTGCTAATACTGGCAAAGAATTCCAGGATGTGTTCCCA
AATATCCTCAGCAGAGCCACTCTAATCCTTGATCTGTTTTATGGGTTCTCTCTGATTGAGGTTGATACCA
GTGAGCACATCTACCTCCTTGTCCCCCAACCAGAATCAGAAGAAGAACAAGTAATGCTAGAGAGCCTGGG
CAGACCCACCCAAGAATACTTGATGCCAATCCTGGGTTTGATCTTCCTGATGGGCAACCGTGTCAAAGAG
GCCAAGATCTGGAACTTACTCCAGAGATTCAGTGTTGATGTAGGGAGGAAACATGCCATCACCTGTAAGC
TAATGAGGCAACGCTACCTAGAATGCAGGCCGCTCTCCTACTCGAATCCAGTTGAATACGAGCTGCTCTG
GGGTCCTCGGGCTCACCATGAAATCACCAAAATGAAAGCCTTGGAATATATGGCTAGGTTCTATGGAAAA
CAGCCACAGGACTGGCCAGAGCAATACAGGGAGGCTGTGGAAGATGAGGAGGCCAGGGCCAGGTCTGAGG
CAACAGCCATGTTCTTCTTCGGTTCCATCTGA

Translation (523 aa):
MSLVSQNARQSSAETTADYSNSQGEMQATNASGPATSMLALEAPQGPEIPNDPQGASASQAVRDPSDIEV
LIDEQSRRLGALRVHDPLEERSVALVNFMRMKSQNEGSIRQSEMLEFLKEYSDQFPEILRRASAHLDRVF
GLNLRVLDPQMDTYNLISKPGPQTTERLAETLDIPKAGLLALVLGHILLNGNRAREASIWDLLLKVDVID
GSQRINNQFGNTRNLLTIDFVHMRFLEYWPVYGTNPLEFEFLWGSRAHSEITKMEALKFVAEAHDEEPWS
WPEEYNKALEADKAKERSQAAGLEFWSEDTMNDKANELVQLAIGVTEELLPIHQDELFANTGKEFQDVFP
NILSRATLILDLFYGFSLIEVDTSEHIYLLVPQPESEEEQVMLESLGRPTQEYLMPILGLIFLMGNRVKE
AKIWNLLQRFSVDVGRKHAITCKLMRQRYLECRPLSYSNPVEYELLWGPRAHHEITKMKALEYMARFYGK
QPQDWPEQYREAVEDEEARARSEATAMFFFGSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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