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Report for CCDS50101.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50101.1 Public Mus musculus 17 H2-T25 23 108 98 CCDS HistoryNCBI Gene:630294Re-query CCDS DB by CCDS ID:50101.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50101.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046131.15 ENSMUSP00000040558.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046131.15Link to Ensembl Protein Viewer:ENSMUSP00000040558.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000046131Re-query CCDS DB by Protein ID:ENSMUSP00000040558
Original member Current member EBI ENSMUST00000173322.7 ENSMUSP00000133734.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173322.7Link to Ensembl Protein Viewer:ENSMUSP00000133734.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173322Re-query CCDS DB by Protein ID:ENSMUSP00000133734
Original member Current member EBI ENSMUST00000172968.1 ENSMUSP00000133748.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172968.1Link to Ensembl Protein Viewer:ENSMUSP00000133748.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172968Re-query CCDS DB by Protein ID:ENSMUSP00000133748
Original member NCBI NM_001177467.1 NP_001170938.1 Updated not alive Link to Nucleotide Sequence:NM_001177467.1Link to Protein Sequence:NP_001170938.1Re-query CCDS DB by Nucleotide ID:NM_001177467Re-query CCDS DB by Protein ID:NP_001170938
Current member NCBI NM_001177467.2 NP_001170938.1 Accepted alive Link to Nucleotide Sequence:NM_001177467.2Link to Protein Sequence:NP_001170938.1Re-query CCDS DB by Nucleotide ID:NM_001177467Re-query CCDS DB by Protein ID:NP_001170938Link to BLAST:NP_001170938.1

Chromosomal Locations for CCDS 50101.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 36127640 36127884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36128474 36128740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36128895 36129164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36129340 36129415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGGGGACCCTTACGAGTTGCCCTCTACTTCTCCTGCTGCTGGCGACCGCCCTGGCCCCGACCCGAGCGG
GCAAGAGCTCACACTCGCTGCGGTATTTCGCCACTGCCATGTCCAGGCCAGGCTTAGGGGAGCCCCGGTT
CACCGCCGTGGGTTACGTGGACGACACACAGTTCATGCGCTTCGACAGCGACTCTGAGAATCCCAGGGCC
GAGCCATGCAAGCCATGGGTGGAACAGATGGAGCCCGAATATTGGGAGCAGGAGACGCGGAAATTCAAGG
AGCACACCCAGAATTTCCGAACTTGCCTTTACAACCTACTCCACCTGTACAACCAGAGTCAGGACGGTCC
CCACACTATCCAGGATATGCACGGATGCTACGTGGGACCAGATGGTCAGTTCCTACACGGGCACTATCAA
CATGCCTATGATGGCCACGATTACATCACCCTGAACGAGGACCTGAGCTCCTGGACCGCAGCAGATGCAG
TGGCTCAGATCACTCAACACAAATGGGAGGAGGCTGGAGTGGCAGAGGAATACAAGGCCTACCTAGAGGG
CACATGCGTGGAGACACTCCACAGATTGTTGGAGGAAGCTCAGCAACACTCAGACCCCCCAAATACACAT
GTGACCCGTCACCCCAGACCTGAAGGTGAAGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCTG
ACATCACCCTGACCTGGCAGTTGAATGGGGAGGAGCTGACCCAGGACATGGAGCTTGTGGAGACCAGGCC
TGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTCGTGGTGCCTTTTGGGGAGGAGCCTAGATACACA
TGCCATGTGTACCATTAG

Translation (285 aa):
MGTLTSCPLLLLLLATALAPTRAGKSSHSLRYFATAMSRPGLGEPRFTAVGYVDDTQFMRFDSDSENPRA
EPCKPWVEQMEPEYWEQETRKFKEHTQNFRTCLYNLLHLYNQSQDGPHTIQDMHGCYVGPDGQFLHGHYQ
HAYDGHDYITLNEDLSSWTAADAVAQITQHKWEEAGVAEEYKAYLEGTCVETLHRLLEEAQQHSDPPNTH
VTRHPRPEGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWAAVVVPFGEEPRYT
CHVYH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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