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Report for CCDS77939.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77939.1 Public Homo sapiens 4 SPARCL1 24 110 108 CCDS HistoryNCBI Gene:8404Re-query CCDS DB by CCDS ID:77939.1Re-query CCDS DB by GeneID:8404See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77939.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000503414.5 ENSP00000422903.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503414.5Link to Ensembl Protein Viewer:ENSP00000422903.1Re-query CCDS DB by Nucleotide ID:ENST00000503414Re-query CCDS DB by Protein ID:ENSP00000422903
Original member Current member NCBI NM_001291976.2 NP_001278905.1 Accepted alive Link to Nucleotide Sequence:NM_001291976.2Link to Protein Sequence:NP_001278905.1Re-query CCDS DB by Nucleotide ID:NM_001291976Re-query CCDS DB by Protein ID:NP_001278905Link to BLAST:NP_001278905.1
Original member Current member NCBI NM_001291977.2 NP_001278906.1 Accepted alive Link to Nucleotide Sequence:NM_001291977.2Link to Protein Sequence:NP_001278906.1Re-query CCDS DB by Nucleotide ID:NM_001291977Re-query CCDS DB by Protein ID:NP_001278906Link to BLAST:NP_001278906.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278905.1 539 Q14515-2 539 100% 0 0
NP_001278906.1 539 Q14515-2 539 100% 0 0

Chromosomal Locations for CCDS 77939.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 87473775 87473803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87479430 87479578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87480372 87480520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87482424 87482560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87490273 87490393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87490760 87490878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87491618 87491690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87493582 87494424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGAGTGAGCCTCAGGAGAAAAAACTCTCAGAGAACACTGATTTTTTGGCTCCTGGTGTTAGTTCCTTCA
CAGATTCTAACCAACAAGAAAGTATCACAAAGAGAGAGGAAAACCAAGAACAACCTAGAAATTATTCACA
TCATCAGTTGAACAGGAGCAGTAAACATAGCCAAGGCCTAAGGGATCAAGGAAACCAAGAGCAGGATCCA
AATATTTCCAATGGAGAAGAGGAAGAAGAAAAAGAGCCAGGTGAAGTTGGTACCCACAATGATAACCAAG
AAAGAAAGACAGAATTGCCCAGGGAGCATGCTAACAGCAAGCAGGAGGAAGACAATACCCAATCTGATGA
TATTTTGGAAGAGTCTGATCAACCAACTCAAGTAAGCAAGATGCAGGAGGATGAATTTGATCAGGGTAAC
CAAGAACAAGAAGATAACTCCAATGCAGAAATGGAAGAGGAAAATGCATCGAACGTCAATAAGCACATTC
AAGAAACTGAATGGCAGAGTCAAGAGGGTAAAACTGGCCTAGAAGCTATCAGCAACCACAAAGAGACAGA
AGAAAAGACTGTTTCTGAGGCTCTGCTCATGGAACCTACTGATGATGGTAATACCACGCCCAGAAATCAT
GGAGTTGATGATGATGGCGATGATGATGGCGATGATGGCGGCACTGATGGCCCCAGGCACAGTGCAAGTG
ATGACTACTTCATCCCAAGCCAGGCCTTTCTGGAGGCCGAGAGAGCTCAATCCATTGCCTATCACCTCAA
AATTGAGGAGCAAAGAGAAAAAGTACATGAAAATGAAAATATAGGTACCACTGAGCCTGGAGAGCACCAA
GAGGCCAAGAAAGCAGAGAACTCATCAAATGAGGAGGAAACGTCAAGTGAAGGCAACATGAGGGTGCATG
CTGTGGATTCTTGCATGAGCTTCCAGTGTAAAAGAGGCCACATCTGTAAGGCAGACCAACAGGGAAAACC
TCACTGTGTCTGCCAGGATCCAGTGACTTGTCCTCCAACAAAACCCCTTGATCAAGTTTGTGGCACTGAC
AATCAGACCTATGCTAGTTCCTGTCATCTATTCGCTACTAAATGCAGACTGGAGGGGACCAAAAAGGGGC
ATCAACTCCAGCTGGATTATTTTGGAGCCTGCAAATCTATTCCTACTTGTACGGACTTTGAAGTGATTCA
GTTTCCTCTACGGATGAGAGACTGGCTCAAGAATATCCTCATGCAGCTTTATGAAGCCAACTCTGAACAC
GCTGGTTATCTAAATGAGAAGCAGAGAAATAAAGTCAAGAAAATTTACCTGGATGAAAAGAGGCTTTTGG
CTGGGGACCATCCCATTGATCTTCTCTTAAGGGACTTTAAGAAAAACTACCACATGTATGTGTATCCTGT
GCACTGGCAGTTTAGTGAACTTGACCAACACCCTATGGATAGAGTCTTGACACATTCTGAACTTGCTCCT
CTGCGAGCATCTCTGGTGCCCATGGAACACTGCATAACCCGTTTCTTTGAGGAGTGTGACCCCAACAAGG
ATAAGCACATCACCCTGAAGGAGTGGGGCCACTGCTTTGGAATTAAAGAAGAGGACATAGATGAAAATCT
CTTGTTTTGA

Translation (539 aa):
MSEPQEKKLSENTDFLAPGVSSFTDSNQQESITKREENQEQPRNYSHHQLNRSSKHSQGLRDQGNQEQDP
NISNGEEEEEKEPGEVGTHNDNQERKTELPREHANSKQEEDNTQSDDILEESDQPTQVSKMQEDEFDQGN
QEQEDNSNAEMEEENASNVNKHIQETEWQSQEGKTGLEAISNHKETEEKTVSEALLMEPTDDGNTTPRNH
GVDDDGDDDGDDGGTDGPRHSASDDYFIPSQAFLEAERAQSIAYHLKIEEQREKVHENENIGTTEPGEHQ
EAKKAENSSNEEETSSEGNMRVHAVDSCMSFQCKRGHICKADQQGKPHCVCQDPVTCPPTKPLDQVCGTD
NQTYASSCHLFATKCRLEGTKKGHQLQLDYFGACKSIPTCTDFEVIQFPLRMRDWLKNILMQLYEANSEH
AGYLNEKQRNKVKKIYLDEKRLLAGDHPIDLLLRDFKKNYHMYVYPVHWQFSELDQHPMDRVLTHSELAP
LRASLVPMEHCITRFFEECDPNKDKHITLKEWGHCFGIKEEDIDENLLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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