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Report for CCDS35689.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35689.1 Public Mus musculus 1 Cntnap5a 23 108 98 CCDS HistoryNCBI Gene:636808Re-query CCDS DB by CCDS ID:35689.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35689.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043725.8 ENSMUSP00000035732.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043725.8Link to Ensembl Protein Viewer:ENSMUSP00000035732.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000043725Re-query CCDS DB by Protein ID:ENSMUSP00000035732
Original member Current member NCBI NM_001077425.2 NP_001070893.1 Accepted alive Link to Nucleotide Sequence:NM_001077425.2Link to Protein Sequence:NP_001070893.1Re-query CCDS DB by Nucleotide ID:NM_001077425Re-query CCDS DB by Protein ID:NP_001070893Link to BLAST:NP_001070893.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070893.1 1304 Q0V8T9 1304 100% 0 0

Chromosomal Locations for CCDS 35689.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 115685137 115685218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 115900930 115901034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 115915141 115915334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116060122 116060269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116089208 116089411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116101551 116101735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116117574 116117714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116157393 116157657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116184306 116184455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116188264 116188435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116221842 116221948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116259453 116259572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116292335 116292535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116412087 116412243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116428472 116428599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116428781 116428951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116442185 116442403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116446509 116446748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116454993 116455217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116518113 116518243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116524234 116524318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116571452 116571670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116577864 116577935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116580481 116580674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3915 nt):
ATGGATTCTGTACCAAGACTGAACAGCGTTTTGACTTTGGTGCTCTCAGGCTTGTGGCATTTAGGATTAA
CAGCGACAAACTACAACTGTGATGACCCATTGTCCAACTTCCTCTCACTGAAGGCTTTCTCCAGTTCCTC
AGATATCACTGGAAGTTCTAGTTCAGCTCAACTGAACTGGAGAATGGGAACTGGTGGTTGGTCCCCAGCA
GATTCCAATGCCCAACAGTGGCTCCAGATTGACCTGCAAAACAGAGTGGAGATTACAGCTGTAGCCACAC
AGGGAAGATATGGAAGCTCTGACTGGGTCACAAGCTATCGCCTGATGTTTAGTGACACAGGGCACAACTG
GCAACCATACAATCAAGAAGACAGCATCTGGACATTTGTAGGAAACATGAATTCTGACAGTGTGGTTCAC
CACAAGCTGCTGCACTCTGTGAGAGCCCGCTTTGTTCGCTTTGTGCCCCTAGAGTGGAACCCGAATGGAA
AGATTGGCATGAGAGTGGAGGCCTATGGATGCTCCTATAGATCAGATGTAGCTGACTTTGATGGCCGGAG
CTCACTTTTATACAGGTTCAATCAGAAGACAATGAGTACCCTCAAAGATGTGATCTCCCTGAAGTTCAAG
AGCATGCAAGGAGATGGAGTTCTGTTTCATGGAGAAGGACAACGTGGAGACCACATCACTCTGGAACTCC
AGAAGGGCAGGCTAGCTCTCTACCTGAACCTGGATGACAGCAAAGCTCGGCTCAGCAGCACTGTGCCCTT
GGTCATCCTGGGTAGCCTTCTGGATGACCAGCACTGGCATTCAGTTCTCCTGGAGCGTGTGGGCAAGCAG
GCAAACTTCACTGTGGACATGAACACTCAGCACTTCCGGACCAAGGGTGACACAGATTCTCTGGACATTG
ACTATGAGCTCAGTTTTGGAGGAATTCCAGTACCAAGCAAACCTGGGACATTTTTAAAGAAAAACTTCCA
TGGCTGTATTGAAAACCTTTACTACAATGGAGTGAACATAATTGATTTGGCTAAAAGACGCAAGCATCAG
ATCTACTCAGGCAATGTCACTTTTTCCTGCTCAGAACCACAAATTGTTCCTATCACATTTATCAACTCCA
GGAGCAGTTATTTGATGCTGCCTGGAACCCCCCAAATTGATGGTCTGTCAGTGAGTTTCCAGTTCCGAAC
ATGGAATGAGGATGGTCTGCTTCTGTCCACAGAGCTGTCTGAAGGCTCAGGGACCCTGCTGCTCATACTG
GAGGGAGGGACTCTGAGGCTCCTGATTAAGAAAGTGGCAAGACATGGAACTGAAATCCTCACAGGCAGTG
GCTTAAATGATGGCCTGTGGCATTCTGTCAGCATCAATGCCAGAAGAAATCGTGTTACTCTCACACTGGA
TAATGATGCTGCTTCCCCAGCTCCAGACACCTCCCGAATACAGATTTATTCTGGAAAGAGTTACTACTTT
GGAGGGTGCCCTGACAATCTCACCGATTCCCAATGCTTAAACCCCATTAAGGCTTTCCAAGGCTGCATGA
GGCTCATCTTTATTGATAACCAGCCCAAGGACCTCATTTCAGTTCAGCAAGGTTCCCTGGGGAGTTTTAG
TGATTTACACATTGATCTGTGTAGCATCAAAGACAGGTGTTTGCCAAACTACTGTGAACATGGAGGACAT
TGTGACCAAACCTGGACTACCTTCTACTGCAACTGTAGTGGTACTGGTTACACTGGAGCCACCTGCCATG
ACTCCATCTATGAGCAATCCTGTGAGGTGTATAGACACAGAGGGCACACAGCTGGGTTCTTCTATGTTGA
CTCTGATGGCAGTGGGCCACTGGGACCCCTTCAGGTGTACTGCAATATTACTGAGGACAAGATATGGATG
ACAGTTCAGCACAACAACACAGAGCTGACTCGGGTACAGGGTTCCAGTCCTGAGAATCCCTACTCCATGA
CCTTAAACTATGGTGGCAGTATGGAGCAGCTGGAAGCTTTGATTGATGGCTCAGAATACTGTGAACAGGA
GGTGATATACCACTGTAGGAGATCCCGTCTGCTTAACACACCAGATGGAGCCCCATTCACCTGGTGGATT
GGGAGGTCCACTGAAAGGCACCCTTACTGGGGAGGTGCTGTTCCGGGAGTCCAGCAGTGTGGATGTGGCC
TGGAGGAAAGCTGCCTGGACAGTCGACACTTTTGCAATTGTGATGCAGATATAGATGAATGGGCAAATGA
TACTGGCTTGTTTTCCTTCAAAGATCACTTGCCTGTAACTCAGATAATTATCATGGATACCAACCGAACA
AACTCAGAAGCTGCTTGGAGAATTGGGCCTTTGCGTTGCTATGGTGACAGGCACTTCTGGAATGCCGTCT
CATTTTCTACGGAAGCGTCTTACCTCCACTTTCCCACCTTCCATACGGAATTCAGCGCTGACATTTCTTT
CTTTTTCAAAACCACCGCTTTATCTGGAGTTTTTCTAGAAAACCTTGGCATTAAAGACTTCTTCCGACTT
GAAATGAGCTCCCCTTCTGAGGTCACATTTGCCATTGATGTTGGAAACGGCCCCATCGAGCTCCTCGTCC
AGTCTCCTTATCCTCTGAATGACAATCAATGGCATTACATCCGAGCTGAGACAAACCTCAAGGAGACCTC
ACTTCAGGTGGACAACCTTCCACAGAGTATGAGGGAGGCCTCAGAGGGAGGCCATTTCCGACTTCAGTTG
AATAGCCAGTTGTTTGTAGGAGGAACATCATCAAGACAGAAAGGCTTTCTTGGATGCATCCGTTCTTTAC
TCTTGAATGGGCATAAAGTAGACCTGGAAGAGAGGGCAAAGGTCACGTCTGGAGTCAGACCTGGTTGTCC
AGGTCACTGCAGCAGCTATGGAAGCAATTGCCACAATGGGGGCAAGTGTGTGGAGAAACATACTGGTTAT
TCCTGTGACTGTACCAACTCACCGTATGAAGGACCTTTCTGCAGGAAAGAAATTTCAGCTCTTTTTGATT
CTGGCACATCTGTAACATACATGTTTCAAGAACCATATCCAGTGACCAAGAACACAAGCCTTTCCTCTTC
AGCTATCTACACAGATTTAGCTCCATTCAAGGAAACAATCATGCTGAGTTTCATGACAACACAAGCCCCC
ACCCTCTTGCTCTACCTCAATTTTTCTTCTCAGAATTTTCTGGCTATCCTGCTCTCCAGGAATGGAAGTT
TACAGGTTCGATATCGACTAAGCAAGGATGAAAGTCATGTATTCAACATGGACACAGAGAATCTGGCCAA
CAGAAGAGTGCATCAGGTGAAGATTAGCCGAGATGGTCCAGAACTTTCCATTCAGATGGACCAACAACTC
TTCAGCTATAGCTTCTCCCCAGAAGTTGAGTTCCGGACACTGAGGTCACTTGTCCTAGGCAAAGTCACAG
AAACTCTTGATTTGGATCCAGAAGTTGCTCGAGCGAACACCTTGGGTTTTGTTGGATGCCTTTCTTCAGT
CCAATACAATCACATAGCACCATTGAAGGCAGCCCTCCGCCATGCCAGTATTGCACCTGTGACTGTCCAA
AAGACCTTGACAGAATCCAGCTGTGGCTCCATGGTGGACTCTGATGTGAATGCAGTGACCACCGTGCATT
CTTTGTCAGATTCCTTTGGAAAGACAGATGACCATGAACCACTCCAAAATGCAGTCCGAAGTGACTCAGC
AGTCATTGGAGGCGTCATAGCAGTGGTGACATTTATTACTTTTTGTGTCATTGGAATCATGACCCGCTTC
CTCTATCAACATAAGCAGTCACACCGCACCAATCAGATGAAGAAGGAATACCCAGAGAACTTGGACAATT
CCTTTAGAAATGAAATTGACTTGCAAAACACAGCCACTGAATGCAAACGAGAATATTTCATCTGA

Translation (1304 aa):
MDSVPRLNSVLTLVLSGLWHLGLTATNYNCDDPLSNFLSLKAFSSSSDITGSSSSAQLNWRMGTGGWSPA
DSNAQQWLQIDLQNRVEITAVATQGRYGSSDWVTSYRLMFSDTGHNWQPYNQEDSIWTFVGNMNSDSVVH
HKLLHSVRARFVRFVPLEWNPNGKIGMRVEAYGCSYRSDVADFDGRSSLLYRFNQKTMSTLKDVISLKFK
SMQGDGVLFHGEGQRGDHITLELQKGRLALYLNLDDSKARLSSTVPLVILGSLLDDQHWHSVLLERVGKQ
ANFTVDMNTQHFRTKGDTDSLDIDYELSFGGIPVPSKPGTFLKKNFHGCIENLYYNGVNIIDLAKRRKHQ
IYSGNVTFSCSEPQIVPITFINSRSSYLMLPGTPQIDGLSVSFQFRTWNEDGLLLSTELSEGSGTLLLIL
EGGTLRLLIKKVARHGTEILTGSGLNDGLWHSVSINARRNRVTLTLDNDAASPAPDTSRIQIYSGKSYYF
GGCPDNLTDSQCLNPIKAFQGCMRLIFIDNQPKDLISVQQGSLGSFSDLHIDLCSIKDRCLPNYCEHGGH
CDQTWTTFYCNCSGTGYTGATCHDSIYEQSCEVYRHRGHTAGFFYVDSDGSGPLGPLQVYCNITEDKIWM
TVQHNNTELTRVQGSSPENPYSMTLNYGGSMEQLEALIDGSEYCEQEVIYHCRRSRLLNTPDGAPFTWWI
GRSTERHPYWGGAVPGVQQCGCGLEESCLDSRHFCNCDADIDEWANDTGLFSFKDHLPVTQIIIMDTNRT
NSEAAWRIGPLRCYGDRHFWNAVSFSTEASYLHFPTFHTEFSADISFFFKTTALSGVFLENLGIKDFFRL
EMSSPSEVTFAIDVGNGPIELLVQSPYPLNDNQWHYIRAETNLKETSLQVDNLPQSMREASEGGHFRLQL
NSQLFVGGTSSRQKGFLGCIRSLLLNGHKVDLEERAKVTSGVRPGCPGHCSSYGSNCHNGGKCVEKHTGY
SCDCTNSPYEGPFCRKEISALFDSGTSVTYMFQEPYPVTKNTSLSSSAIYTDLAPFKETIMLSFMTTQAP
TLLLYLNFSSQNFLAILLSRNGSLQVRYRLSKDESHVFNMDTENLANRRVHQVKISRDGPELSIQMDQQL
FSYSFSPEVEFRTLRSLVLGKVTETLDLDPEVARANTLGFVGCLSSVQYNHIAPLKAALRHASIAPVTVQ
KTLTESSCGSMVDSDVNAVTTVHSLSDSFGKTDDHEPLQNAVRSDSAVIGGVIAVVTFITFCVIGIMTRF
LYQHKQSHRTNQMKKEYPENLDNSFRNEIDLQNTATECKREYFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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