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Report for CCDS51267.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51267.1 Public Mus musculus 4 Skint1 23 108 98 CCDS HistoryNCBI Gene:639781Re-query CCDS DB by CCDS ID:51267.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51267.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162158.1 ENSMUSP00000124737.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162158.1Link to Ensembl Protein Viewer:ENSMUSP00000124737.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162158Re-query CCDS DB by Protein ID:ENSMUSP00000124737
Original member Current member NCBI NM_001102662.1 NP_001096132.1 Accepted alive Link to Nucleotide Sequence:NM_001102662.1Link to Protein Sequence:NP_001096132.1Re-query CCDS DB by Nucleotide ID:NM_001102662Re-query CCDS DB by Protein ID:NP_001096132Link to BLAST:NP_001096132.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001096132.1 364 A7TZE6-1 364 100% 0 0

Chromosomal Locations for CCDS 51267.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 112010678 112010753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112018960 112019307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112021297 112021578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112025467 112025577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112028224 112028331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112028803 112028925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112029407 112029453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGGGATCCACAGGACTATGTTTTTATGGACACTGTATTGTCATGTTCCTTCTTCAGATGGTCACAGCAA
GCTCAGAGCCATTTATAGTGAACGGCTTAGAGGGGCCAGTCTTGGCTTCATTGGGTGGAAACTTAGAACT
CAGTTGTCAGTTGTCTCCACCACAACAAGCCCAGCACATGGAGATTCGCTGGTTCCGGAACCTCTATACA
GAGCCTGTGCACCTGTACAGAGATGGCAAAGACATGTTTGGAGAAATTATCTCCAAGTATGTGGAACGTA
CAGAACTCTTAAAAGATGGGATTGGAGAAGGGAAAGTGACCCTTAGGATCTTTAATGTGACTGTTGATGA
TGATGGGTCTTACCACTGTGTGTTCAAAGATGGTGATTTCTATGAAGAGCACATAACAGAGGTCAAGATC
ACAGCCATAAACTTACAGGTACAGATTCATGTGCACCCTCCTAATACCAAAGGTGTGATAGTGGAGTGTC
ACTCTGGAGGTTGGTTCCCACGACCTCTCATGCAATGGAGAGACAGAAGAGGGGAGGTCATTCCAGCTGC
ATCAAAATCCCACTCACAGGGTAGAGACAAACTGTTCAATATGAAGATATCCCTTCTCATTAGTGAAAGC
TTCTTCCAGAAAGTCATTTGTTGTCTTCAGAACCCTCTAACAGGCCAAGAGGAAAGGACAAGTGTTATTC
TATCAGATGCATTTTTTTCATGGAATAGGATTTGGAAAATGATTCTGGGTATAATACTATCTATGATGGT
GGTCTCTATCTTTGTTTTTAGTTGTCTGCTACATCATGAGCATAAAGTTTGTAAGTGGAAGTGGGATGCT
CCTTGGATAAAAGGATTATTAATAATGACATCTTCTATGGTGACTGTTGTATTAGTCATGGTGTATTTAC
ATATGAAACAAAGAGTTCCAGTTTCAGATGTACATTTTGAATTGGATACTTTGTGGGTGGAAGACATAAG
TGTAATCCTGTGTTCACTGATGGTTCCTGCCACCATGCTTGTTTCCTATACATATTTCAGGTTGAAAGAC
TGGTGCCAGCACAATCATGCTCAGAGAGTCTTCACCAGCAACTGA

Translation (364 aa):
MGSTGLCFYGHCIVMFLLQMVTASSEPFIVNGLEGPVLASLGGNLELSCQLSPPQQAQHMEIRWFRNLYT
EPVHLYRDGKDMFGEIISKYVERTELLKDGIGEGKVTLRIFNVTVDDDGSYHCVFKDGDFYEEHITEVKI
TAINLQVQIHVHPPNTKGVIVECHSGGWFPRPLMQWRDRRGEVIPAASKSHSQGRDKLFNMKISLLISES
FFQKVICCLQNPLTGQEERTSVILSDAFFSWNRIWKMILGIILSMMVVSIFVFSCLLHHEHKVCKWKWDA
PWIKGLLIMTSSMVTVVLVMVYLHMKQRVPVSDVHFELDTLWVEDISVILCSLMVPATMLVSYTYFRLKD
WCQHNHAQRVFTSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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