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Report for CCDS2520.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2520.1 Public Homo sapiens 2 RAB17 24 110 108 CCDS HistoryNCBI Gene:64284Re-query CCDS DB by CCDS ID:2520.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2520.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264601.8 ENSP00000264601.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264601.8Link to Ensembl Protein Viewer:ENSP00000264601.3Re-query CCDS DB by Nucleotide ID:ENST00000264601Re-query CCDS DB by Protein ID:ENSP00000264601
Original member Current member NCBI NM_022449.4 NP_071894.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022449.4Link to Protein Sequence:NP_071894.1Re-query CCDS DB by Nucleotide ID:NM_022449Re-query CCDS DB by Protein ID:NP_071894Link to BLAST:NP_071894.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071894.1 212 Q9H0T7-1 212 100% 0 0

Chromosomal Locations for CCDS 2520.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 237575019 237575128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237575387 237575480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237577257 237577382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237578004 237578155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237585998 237586154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGGCACAGGCACACAGGACCCCCCAGCCCAGGGCTGCCCCCAGCCAGCCCCGTGTGTTCAAGCTGGTTC
TCCTGGGAAGTGGCTCCGTGGGTAAGTCCAGCTTGGCTCTTCGGTACGTGAAGAACGACTTCAAGAGTAT
CCTGCCTACGGTGGGCTGTGCGTTCTTCACAAAGGTGGTGGATGTGGGTGCCACCTCTCTGAAGCTTGAG
ATCTGGGACACAGCTGGCCAGGAGAAGTACCACAGCGTCTGCCACCTCTACTTCAGGGGTGCCAACGCTG
CGCTTCTGGTGTACGACATCACCAGGAAGGATTCCTTCCTCAAGGCTCAGCAGTGGCTGAAGGACCTGGA
GGAGGAGCTGCACCCAGGAGAAGTCCTGGTGATGCTGGTGGGCAACAAGACGGACCTCAGCCAGGAGCGG
GAGGTGACCTTCCAGGAAGGGAAGGAGTTTGCCGACAGCCAGAAGTTGCTGTTCATGGAAACTTCGGCCA
AACTGAACCACCAGGTGTCGGAGGTGTTCAATACAGTGGCCCAAGAGCTACTGCAGAGAAGCGACGAGGA
GGGCCAGGCTCTACGGGGGGATGCAGCTGTGGCTCTGAACAAGGGGCCCGCGAGGCAGGCCAAATGCTGC
GCCCACTAG

Translation (212 aa):
MAQAHRTPQPRAAPSQPRVFKLVLLGSGSVGKSSLALRYVKNDFKSILPTVGCAFFTKVVDVGATSLKLE
IWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLKAQQWLKDLEEELHPGEVLVMLVGNKTDLSQER
EVTFQEGKEFADSQKLLFMETSAKLNHQVSEVFNTVAQELLQRSDEEGQALRGDAAVALNKGPARQAKCC
AH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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