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Report for CCDS81618.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81618.1 Public Homo sapiens 11 C11orf97 24 110 108 CCDS HistoryNCBI Gene:643037Re-query CCDS DB by CCDS ID:81618.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81618.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000542198.3 ENSP00000490577.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000542198.3Link to Ensembl Protein Viewer:ENSP00000490577.1Re-query CCDS DB by Nucleotide ID:ENST00000542198Re-query CCDS DB by Protein ID:ENSP00000490577
Original member Current member NCBI NM_001190462.2 NP_001177391.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001190462.2Link to Protein Sequence:NP_001177391.1Re-query CCDS DB by Nucleotide ID:NM_001190462Re-query CCDS DB by Protein ID:NP_001177391Link to BLAST:NP_001177391.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177391.1 126 A0A1B0GVM6 126 100% 0 0

Chromosomal Locations for CCDS 81618.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 94512529 94512673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94517583 94517687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94528084 94528209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94531896 94531900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGACAGGCGAGGAGGCGGTGGTGGTGACCGCAGTGGTGGCGCCCAAGGCGGGTCGCGAAGAGGAGCAGC
CTCCTCCGCCAGCAGGGCTGGGGTGCGGGGCGCGCGGGGAACCCGGCCGCGGCCCCCTAGAGCACGGCCA
GCAGTGGAAGAAATTTTTATATTGTGAGCCACATAAGAGAATTAAGGAAGTACTGGAAGAAGAACGTCAT
ATTAAGAGAGATGAATGCCACATTAAAAATCCAGCTGCAGTGGCCCTGGAAGGGATTTGGAGCATTAAAA
GGAATCTGCCTGTGGGAGGCTTGAAGCCAGGACTGCCGAGCAGAAACAGTTTATTGCCACAAGCCAAGTA
CTACTCCAGGCACGGAGGACTCAGAAGATAA

Translation (126 aa):
MTGEEAVVVTAVVAPKAGREEEQPPPPAGLGCGARGEPGRGPLEHGQQWKKFLYCEPHKRIKEVLEEERH
IKRDECHIKNPAAVALEGIWSIKRNLPVGGLKPGLPSRNSLLPQAKYYSRHGGLRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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