NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS44542.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44542.2 Public Homo sapiens 11 RASSF10 24 110 108 CCDS HistoryNCBI Gene:644943Re-query CCDS DB by CCDS ID:44542.2See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 44542.1
The coding region has been updated to represent an alternative intronless transcript structure that is more supported by the available data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 44542.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000529419.3 ENSP00000485526.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000529419.3Link to Ensembl Protein Viewer:ENSP00000485526.1Re-query CCDS DB by Nucleotide ID:ENST00000529419Re-query CCDS DB by Protein ID:ENSP00000485526
Original member Current member NCBI NM_001080521.3 NP_001073990.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080521.3Link to Protein Sequence:NP_001073990.2Re-query CCDS DB by Nucleotide ID:NM_001080521Re-query CCDS DB by Protein ID:NP_001073990Link to BLAST:NP_001073990.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073990.2 507 A6NK89 507 100% 0 0

Chromosomal Locations for CCDS 44542.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 13009577 13011100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGGATCCTTCGGAAAAGAAGATATCGGTGTGGATCTGCCAGGAAGAGAAGCTGGTGTCCGGCCTCTCCC
GCCGCACCACTTGCTCCGACGTTGTGCGAGTGCTTTTGGAGGACGGCTGCCGGCGGCGACGGAGACAGCG
GCGGAGCCGGCGGCTGGGGTCGGCCGGCGACCCGCATGGCCCGGGAGAGCTGCCCGAACCCCCGAACGAG
GACGACGAGGACGACGACGAGGCGCTGCCGCAGGGCATGCTGTGCGGGCCCCCGCAGTGCTATTGCATCG
TGGAGAAGTGGCGCGGCTTTGAGCGCATCCTCCCCAACAAGACGCGCATCTTGCGCCTCTGGGCTGCCTG
GGGCGAAGAGCAAGAGAATGTGCGCTTCGTGCTAGTGCGCAGCGAGGCATCGCTGCCTAACGCCGGCCCC
CGCAGCGCCGAGGCGCGCGTAGTGCTGAGCCGAGAGCGCCCCTGTCCGGCCCGCGGGGCCCCGGCGCGGC
CCAGCCTGGCCATGACCCAGGAGAAACAGCGGCGAGTGGTGCGCAAGGCCTTTCGCAAACTGGCCAAGCT
CAACCGGCGGCGCCAGCAGCAGACACCGTCGTCCTGTTCGTCCACTTCGTCGTCCACTGCCTCGTCCTGC
TCTTCGTCGCCGCGGACCCACGAGAGCGCGTCGGTGGAGCGCATGGAGACGCTGGTGCATCTGGTGCTTT
CCCAGGACCACACAATTCGCCAGCAGGTGCAGCGGCTCCACGAGCTGGACCGCGAGATCGATCACTACGA
GGCCAAGGTGCACCTGGACCGCATGCGGCGTCACGGGGTCAACTACGTGCAGGACACTTACTTGGTTGGG
GCAGGCATCGAGCTCGACGGGTCCAGACCGGGAGAGGAGCCAGAAGAGGTGGCGGCGGAGGCGGAGGAGG
CGGCGGCGGCGCCCCCTCTAGCCGGCGAGGCGCAGGCGGCGGCGCTGGAGGAGCTGGCCCGGCGCTGCGA
CGACTTGCTGCGGCTTCAGGAGCAACGGGTTCAGCAGGAGGAGTTGCTGGAGCGCCTTTCAGCCGAGATT
CAGGAGGAACTCAACCAGAGGTGGATGCGACGGCGCCAGGAGGAGCTGGCGGCGCGGGAGGAGCCCCTGG
AGCCCGACGGTGGCCCCGACGGCGAGCTGCTGCTGGAGCAGGAACGGGTCAGGACGCAGCTCAGTACCAG
CCTTTACATTGGGCTGCGGCTCAACACGGACCTAGAGGCCGTCAAGTCGGACTTGGATTACAGCCAGCAG
CAATGGGACAGCAAGAAGCGCGAGCTACAGGGCCTTCTGCAAACTTTGCACACTTTGGAGCTGACGGTGG
CACCGGATGGGGCTCCTGGCTCTGGCAGTCCCTCGCGGGAACCTGGGCCTCAAGCCTGCGCCGACATGTG
GGTGGACCAGGCCCGTGGACTGGCCAAGAGCGGTCCTGGCAACGACGAAGACTCGGATACGGGACTGAGC
TCTATGCATAGCCAAGACTCGGACTCCTTGCCCATGTGCGAATCCCTTGTGTAG

Translation (507 aa):
MDPSEKKISVWICQEEKLVSGLSRRTTCSDVVRVLLEDGCRRRRRQRRSRRLGSAGDPHGPGELPEPPNE
DDEDDDEALPQGMLCGPPQCYCIVEKWRGFERILPNKTRILRLWAAWGEEQENVRFVLVRSEASLPNAGP
RSAEARVVLSRERPCPARGAPARPSLAMTQEKQRRVVRKAFRKLAKLNRRRQQQTPSSCSSTSSSTASSC
SSSPRTHESASVERMETLVHLVLSQDHTIRQQVQRLHELDREIDHYEAKVHLDRMRRHGVNYVQDTYLVG
AGIELDGSRPGEEPEEVAAEAEEAAAAPPLAGEAQAAALEELARRCDDLLRLQEQRVQQEELLERLSAEI
QEELNQRWMRRRQEELAAREEPLEPDGGPDGELLLEQERVRTQLSTSLYIGLRLNTDLEAVKSDLDYSQQ
QWDSKKRELQGLLQTLHTLELTVAPDGAPGSGSPSREPGPQACADMWVDQARGLAKSGPGNDEDSDTGLS
SMHSQDSDSLPMCESLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH