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Report for CCDS23196.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23196.1 Public Mus musculus 9 Ireb2 23 108 98 CCDS HistoryNCBI Gene:64602Re-query CCDS DB by CCDS ID:23196.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23196.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034843.8 ENSMUSP00000034843.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034843.8Link to Ensembl Protein Viewer:ENSMUSP00000034843.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034843Re-query CCDS DB by Protein ID:ENSMUSP00000034843
Original member NCBI NM_022655.3 NP_073146.2 Updated not alive Link to Nucleotide Sequence:NM_022655.3Link to Protein Sequence:NP_073146.2Re-query CCDS DB by Nucleotide ID:NM_022655Re-query CCDS DB by Protein ID:NP_073146
Current member NCBI NM_022655.4 NP_073146.2 Accepted alive Link to Nucleotide Sequence:NM_022655.4Link to Protein Sequence:NP_073146.2Re-query CCDS DB by Nucleotide ID:NM_022655Re-query CCDS DB by Protein ID:NP_073146Link to BLAST:NP_073146.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_073146.2 963 Q811J3 963 100% 0 0

Chromosomal Locations for CCDS 23196.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 54863878 54863896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54865307 54865396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54881353 54881518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54882319 54882456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54883897 54884115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54885875 54885944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54886490 54886673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54887268 54887407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54891003 54891174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54892475 54892572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54895379 54895495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54896440 54896599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54897487 54897622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54899388 54899472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54899950 54900106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54900448 54900572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54903891 54903995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54904095 54904237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54906569 54906716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54906801 54906923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54908742 54908927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54909631 54909741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2892 nt):
ATGGACTCCCCAAGTGCAGGATACACCTTTGAGTACCTTATTGAAACATTAAATGGCAATTCACAGAAGA
AGTTCTTCAATGTACCTAAACTTGGCGGCACCAAGTATGATATTCTGCCTTACTCAATACGGGTCCTATT
GGAAGCTGCTGTACGAAATTGTGATGGCTTTTTAATGAAAAAGGAAGATGTTATGAACATTTTGGACTGG
AAAACCAAACAGAGCAATGTTGAAGTGCCCTTTTTCCCTGCCCGTGTTGTTCTTCAAGATTTCACTGGAA
TACCGGCAATGGTGGATTTTGCTGCTATGAGGGAGGCAGTGAAAACTCTTGGAGGTGATCCTAAGAAAGT
CCACCCTGCCTGTCCGACAGATCTCACAGTGGACCACTCTTTACAGATTGACTTCAGTAAATGTGCAATA
CAGAATGCACCAAATCCTGGAGGTGGTGACCTACAGAAAGCAGGAAAGCTCTCTCCACTTAAAGTGCAGT
CTAAGAAGCTTCCATGTCGAGGCCAGACTACCTGCCGGGGATCGTGTGATTCTGGAGAGCTAAGCCGGAA
CTCAGGAACATTTTCTTCACAGATTGAGAATACACCTGTCTTGTGTCCTTTTCATTTGCAACCAGTGCCT
GAACCTGAGACAGTGTTAAAAAATCAAGAAGTAGAATTTGGCAGAAATCGAGAGAGGCTTCAGTTTTTCA
AGTGGAGCTCAGGAGCTTTTAAGAATGTGGCAGTCATCCCGCCTGGAACTGGAATGGCTCATCAAGTGAA
CTTAGAATATTTATCAAGAGTAGTTTTTGAAGAAACGGACCTGCTCTTCCCAGACAGTGTAGTTGGCACA
GATTCTCATATAACCATGGTGAACGGATTGGGGATTCTTGGGTGGGGAGTTGGTGGCATTGAGACAGAGG
CAGTTATGCTTGGCCTGCCAGTTACTCTTACTTTACCAGAGGTGGTTGGATGTGAGCTAACTGGGTCATC
CAATGCTTTTGTTACATCCATAGATATTGTCCTTGGCATTACAAAGCACCTCAGGCAAGTAGGCGTGGCT
GGAAAGTTTGTTGAGTTCTTTGGAAGTGGAGTTTCACAATTATCTATTGTCGATAGAACTACCATAGCAA
ACATGTGTCCAGAATATGGTGCTATCCTCAGCTTTTTCCCTGTTGACAATGTGACACTACGACATTTAGA
ACATACAGGTTTTGACAAAACCAAACTTGAGTCAATGGAAAAATACCTTAAAGCTGTGAAATTGTTTCGA
AATGATGAGAATTCTTCAGAACCTGAATATTCTCAGGTGATACAGATTAATCTGAATTCAATAGTTGCAT
CTGTCAGTGGTCCAAAAAGGCCTCAGGATAGGGTTGCTGTAACAGATATGAAAAGTGATTTTCAGGCTTG
CTTAAATGAAAAGGTTGGATTTAAAGGCTTCCAAGTTGCAGCAGAAAAACAAAGTGACACTGTCTCTGTT
CGTTATGATGGAAGTGAGTATAAGCTGTCCCATGGATCCGTGGTCATTGCTGCAGTTATCAGTTGTACCA
ATAATTGCAATCCATCTGTGATGCTTGCTGCAGGTCTTCTGGCTAAAAAGGCTGTTGAAATTGGTCTACG
AGTTAAACCTTATATACGAACAAGTTTGTCTCCAGGCAGTGGGATGGTTACACATTACCTCAGTTCAAGT
GGAGTGCTACCCTATCTTAGCAAGCTAGGGTTTGACATAGTTGGCTATGGATGTTCAACATGTGTAGGAA
ATACAGCACCTTTATCAGAAGCAGTTTTGAATGCAGTAAAACAGGGTGATTTGGTTACCTGTGGAGTTTT
ATCTGGAAACAAACATTTCGAAGGCCGTCTCTGTGATTGTGTCCGTGCCAATTATCTCGCCTCTCCGCCC
TTAGTGGTGGCTTATGCCATAGCAGGCACAGTGAATATAGACTTCCAGACAGAGCCTTTAGGTACTGACT
CTACGGGCAAGGAAATTTACCTGCATGACATTTGGCCTAGTCGAGAAGAAGTTCATCAGATGGAGGAAGA
ACATGTTATATTGTCAATGTTTAAAACACTAAAAGAGAAAGTAGAGATGGGAAATAAACGGTGGAATTCG
TTAGAAGCTCCAGACTCCGTGCTGTTTCCATGGGATGTGAAGTCTACTTACATCAGATGCCCTTCATTTT
TTGATAAGCTTACCAAAGAGCCAGCTGCATCCCAGCCTATTGAGAATGCCCATGTCCTGTTGTATTTGGG
AGACTCTGTCACTACAGATCATATATCACCCGCTGGAAGTATTGCTAGGAGTAGTGCTGCTGCTAAGTAT
TTGACAAACAGAGGCCTTACTCCCCGAGAGTTCAACTCTTATGGAGCTCGAAGAGGTAATGATGCTGTGA
TGACAAGAGGCACATTTGCAAACATCAAGCTTTTTAATAAGTTTATTGGGAAGCCAGCTCCCAAAACAAT
TCATTTTCCATCGGGACAAACGCTCGATGTATTTGAAGCTGCAGAACTGTACCAGAAAGAAGGTATCCCA
CTGATAATTTTAGCAGGAAAAAAATATGGTTCAGGAAATTCAAGAGATTGGGCTGCCAAGGGACCCTATT
TGCTGGGTGTAAAAGCTGTTTTGGCTGAGAGCTATGAAAAAATACACAAAGATCATTTGATTGGAATTGG
TATAGCACCACTTGAATTCCTCCCAGGAGAAAATGCAGATTCCTTGGGCCTCTCTGGCAGAGAAGTATTT
TCTTTATCATTTCCTGAAGAACTCTTTCCTGGAATTACATTAAATATAAAGACAAGCACTGGAAAAGAGT
TCAGCGTGATTGCATCATTTGCAAATGACGTGGAGATAACTTTGTACAAACATGGAGGCTTATTAAACTT
TGTGGCTCGAAAATTCTTATAG

Translation (963 aa):
MDSPSAGYTFEYLIETLNGNSQKKFFNVPKLGGTKYDILPYSIRVLLEAAVRNCDGFLMKKEDVMNILDW
KTKQSNVEVPFFPARVVLQDFTGIPAMVDFAAMREAVKTLGGDPKKVHPACPTDLTVDHSLQIDFSKCAI
QNAPNPGGGDLQKAGKLSPLKVQSKKLPCRGQTTCRGSCDSGELSRNSGTFSSQIENTPVLCPFHLQPVP
EPETVLKNQEVEFGRNRERLQFFKWSSGAFKNVAVIPPGTGMAHQVNLEYLSRVVFEETDLLFPDSVVGT
DSHITMVNGLGILGWGVGGIETEAVMLGLPVTLTLPEVVGCELTGSSNAFVTSIDIVLGITKHLRQVGVA
GKFVEFFGSGVSQLSIVDRTTIANMCPEYGAILSFFPVDNVTLRHLEHTGFDKTKLESMEKYLKAVKLFR
NDENSSEPEYSQVIQINLNSIVASVSGPKRPQDRVAVTDMKSDFQACLNEKVGFKGFQVAAEKQSDTVSV
RYDGSEYKLSHGSVVIAAVISCTNNCNPSVMLAAGLLAKKAVEIGLRVKPYIRTSLSPGSGMVTHYLSSS
GVLPYLSKLGFDIVGYGCSTCVGNTAPLSEAVLNAVKQGDLVTCGVLSGNKHFEGRLCDCVRANYLASPP
LVVAYAIAGTVNIDFQTEPLGTDSTGKEIYLHDIWPSREEVHQMEEEHVILSMFKTLKEKVEMGNKRWNS
LEAPDSVLFPWDVKSTYIRCPSFFDKLTKEPAASQPIENAHVLLYLGDSVTTDHISPAGSIARSSAAAKY
LTNRGLTPREFNSYGARRGNDAVMTRGTFANIKLFNKFIGKPAPKTIHFPSGQTLDVFEAAELYQKEGIP
LIILAGKKYGSGNSRDWAAKGPYLLGVKAVLAESYEKIHKDHLIGIGIAPLEFLPGENADSLGLSGREVF
SLSFPEELFPGITLNIKTSTGKEFSVIASFANDVEITLYKHGGLLNFVARKFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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