NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29588.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29588.1 Public Mus musculus 19 Slc15a3 23 108 98 CCDS HistoryNCBI Gene:65221Re-query CCDS DB by CCDS ID:29588.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29588.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025646.2 ENSMUSP00000025646.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025646.2Link to Ensembl Protein Viewer:ENSMUSP00000025646.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000025646Re-query CCDS DB by Protein ID:ENSMUSP00000025646
Original member Current member NCBI NM_023044.2 NP_075531.2 Accepted alive Link to Nucleotide Sequence:NM_023044.2Link to Protein Sequence:NP_075531.2Re-query CCDS DB by Nucleotide ID:NM_023044Re-query CCDS DB by Protein ID:NP_075531Link to BLAST:NP_075531.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075531.2 578 Q8BPX9 578 100% 0 0

Chromosomal Locations for CCDS 29588.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10843021 10843578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10848505 10848788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10853129 10853276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10854254 10854361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10854909 10855077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10855888 10856046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10857183 10857338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10857630 10857784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGTCTGCCCCTCGCGCGGAAGAGCAACCAAGCAGGTCCGGAGAGCGACAACCGCTGGTGGCCCGAGGCC
CGCGGGGACCACGACGGTGGAGACGGACAGCTGCTGCTGCGGTGCTGCTAGTGCAGATGCTGGAACGCGC
TGCCTTCTTTGGTGTCACCTCCAACCTCGTGCTCTACCTCAACAGCTTGAACTTCAATTGGGACGGCCAA
CAGGCATCACGGGCCACACTCCTCTTCCTAGGCGCCTCCTACCTGCTGGCTCCAGTGGGGGGCTGGCTGG
CAGACGTGTACCTGGGACGCTTCCTCACTATCTCGCTCAGCCTGCTGCTCTATCTGGCTGCCTCTGGCTT
GTTGCTCACCACCATCACCAATGATGGCCGCAGATCCTTCTGTGGAGAGATGCCCGAGTTGCCACTGGAA
CCTGCCTGCCCATCCTCAAGCTGCCAAGGCTCCTGGTCCAGCCCCTACTGCGCGACCACCCTCTACTTGG
TGTTGCTGCTCCTGGCCCTGGCTGCCAGCTCCGTCAGGAGCACCCTCACCTCGTTCGGGGCTGACCAGGT
GATGGATCTCGGGCGCGATGCCACCCGCCGCTTCTTCAACTGGTTCTATTGGAGCATCAACCTGGGTGCC
ATATTGTCCCTGTTGGTGGTGGCTTTCATCGAGCAGAACATCAGCTTCCTATGGGGCTACAGCATCATCG
TGGGCCTCGTGGGCCTGGCATTCTTCATTTTTCTCTTTGCCACACCAGTCTTCATCACCAAGCCCCCAAC
AGGCAGCCAAGTGTCATCTATGCTGAAGCTTGCGTTCCAAAACTGCTGTCCCTGCCGGAGGTCCTCTTCC
AGGGACTCTGAAAGTGCCCACCTGTTGCCTGACCAGAGGTCTAACCAGCCTGGACCTTCTCCACAAGAAG
ATATGGCCAACTTCCAGGTGCTGGTGAAGATCCTGCCTGTGATGGTGACCCTTGTGCCTTATTGGATGGT
ATATTTCCAGATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACC
AACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGGATCCCAGAAGCCTGGCTCCTAC
TGGCCAATGTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGATCCTCTGCTGCTGCG
GTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATT
GTGGCAGGAGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTG
GGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGT
CAGTGAGATCTTTGCCAGCATCCCAGGTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGT
GCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTAC
TGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTGGGAACATCAACAACTGTCAGATGGACCG
TTACTTCTTCCTGCTGGCCGGCATTGAGGCTGTCACAGCCGTCCTGTTTCTCTGGATTGCTGGTCGCTAT
GAGAGGACTCGCCAGGACCCAGCCTCCCAGCGCTCGTCCAGCAGGGTCAGAGGCTAA

Translation (578 aa):
MSAPRAEEQPSRSGERQPLVARGPRGPRRWRRTAAAAVLLVQMLERAAFFGVTSNLVLYLNSLNFNWDGQ
QASRATLLFLGASYLLAPVGGWLADVYLGRFLTISLSLLLYLAASGLLLTTITNDGRRSFCGEMPELPLE
PACPSSSCQGSWSSPYCATTLYLVLLLLALAASSVRSTLTSFGADQVMDLGRDATRRFFNWFYWSINLGA
ILSLLVVAFIEQNISFLWGYSIIVGLVGLAFFIFLFATPVFITKPPTGSQVSSMLKLAFQNCCPCRRSSS
RDSESAHLLPDQRSNQPGPSPQEDMANFQVLVKILPVMVTLVPYWMVYFQMQSTYVLQGLHLHIPNIFRT
NPNISLLLRSDSSNYRIPEAWLLLANVAVILILIPVKDHLIDPLLLRCKLLPSSLQKMALGMFFGFTSII
VAGVLEKERLQYIAANQTVPQLIGKDLYYAAPLSIWWQIPQYLLIGVSEIFASIPGLEFAYSEAPRSMQG
AIMGIFFCLSGVGSLLGSGLVALLSFPGGWMYCPKDFGNINNCQMDRYFFLLAGIEAVTAVLFLWIAGRY
ERTRQDPASQRSSSRVRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH