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Report for CCDS570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
570.1 Public Homo sapiens 1 COA7 24 110 108 CCDS HistoryNCBI Gene:65260Re-query CCDS DB by CCDS ID:570.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 570.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371538.5 ENSP00000360593.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371538.5Link to Ensembl Protein Viewer:ENSP00000360593.3Re-query CCDS DB by Nucleotide ID:ENST00000371538Re-query CCDS DB by Protein ID:ENSP00000360593
Original member Current member NCBI NM_023077.3 NP_075565.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_023077.3Link to Protein Sequence:NP_075565.2Re-query CCDS DB by Nucleotide ID:NM_023077Re-query CCDS DB by Protein ID:NP_075565Link to BLAST:NP_075565.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075565.2 231 Q96BR5 231 100% 0 0

Chromosomal Locations for CCDS 570.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 52687720 52688168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52692727 52692867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52698221 52698326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (696 nt):
ATGGCCGGCATGGTGGACTTCCAGGATGAGGAGCAGGTCAAGTCCTTTTTGGAGAACATGGAGGTGGAGT
GCAACTACCACTGCTACCACGAGAAGGACCCGGACGGTTGCTATCGGCTGGTGGACTATTTGGAAGGGAT
CCGGAAGAATTTTGATGAGGCTGCCAAGGTGTTGAAGTTTAACTGTGAAGAGAACCAGCACAGTGATAGC
TGCTACAAACTGGGGGCCTACTATGTGACTGGAAAAGGTGGTCTGACCCAGGACCTGAAAGCTGCCGCCA
GGTGCTTTTTGATGGCGTGTGAGAAGCCTGGAAAGAAGTCAATAGCAGCATGTCACAACGTTGGCCTCCT
GGCACATGATGGACAGGTTAATGAGGATGGCCAGCCTGACTTGGGAAAGGCCAGGGACTACTACACAAGG
GCCTGTGATGGTGGCTATACTTCCAGTTGCTTCAACCTCAGTGCCATGTTCCTGCAGGGTGCCCCAGGCT
TTCCCAAGGACATGGACCTGGCATGTAAATACTCCATGAAAGCCTGTGACCTGGGTCATATCTGGGCCTG
TGCCAATGCCAGTCGCATGTACAAGCTGGGGGATGGTGTTGATAAGGATGAGGCCAAGGCCGAGGTGCTA
AAAAATCGAGCCCAGCAGCTACACAAAGAACAGCAGAAAGGTGTCCAACCCTTAACATTTGGGTAA

Translation (231 aa):
MAGMVDFQDEEQVKSFLENMEVECNYHCYHEKDPDGCYRLVDYLEGIRKNFDEAAKVLKFNCEENQHSDS
CYKLGAYYVTGKGGLTQDLKAAARCFLMACEKPGKKSIAACHNVGLLAHDGQVNEDGQPDLGKARDYYTR
ACDGGYTSSCFNLSAMFLQGAPGFPKDMDLACKYSMKACDLGHIWACANASRMYKLGDGVDKDEAKAEVL
KNRAQQLHKEQQKGVQPLTFG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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