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Report for CCDS87287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87287.1 Public Homo sapiens 5 ZDHHC11B 24 110 108 CCDS HistoryNCBI Gene:653082Re-query CCDS DB by CCDS ID:87287.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87287.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000508859.8 ENSP00000442373.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000508859.8Link to Ensembl Protein Viewer:ENSP00000442373.2Re-query CCDS DB by Nucleotide ID:ENST00000508859Re-query CCDS DB by Protein ID:ENSP00000442373
Original member Current member NCBI NM_001351303.2 NP_001338232.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001351303.2Link to Protein Sequence:NP_001338232.1Re-query CCDS DB by Nucleotide ID:NM_001351303Re-query CCDS DB by Protein ID:NP_001338232Link to BLAST:NP_001338232.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001338232.1 371 P0C7U3 371 100% 0 0

Chromosomal Locations for CCDS 87287.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 716808 716865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 730434 730468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 733752 733839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 741594 741628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 745183 745298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 748404 748559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 751133 751257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 754998 755099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 755966 756144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 766698 766919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGGACACCCGCTCCGGGAGCCAGTGTTCCGTCACCCCAGAAGCCATACGCAACAATGAAGAGCTGGTCT
TGCCGCCCCGCATCTCCAGAGTGAACGGCTGGTCGTTACCCCTGCACTACTTCCGGGTGGTGACTTGGGC
TGTCTTCGTTGGCCTTTCCTTGGCCACCTTCAGGATCTTCATTCCCCTCCTGCCTCACTCGTGGAAATAC
ATCGCCTATGTGGTGACCGGGGGGATCTTCTCGTTCCACCTCGTCGTCCACCTGATCGCGTCCTGCATCG
ACCCGGCCGACTCCAATGTCAGACTCATGAAGAACTATTCTCAGCCCATGCCCCTCTTCGACAGATCAAA
ACATGCACACGTGATCCAGAATCAGTTCTGCCACCTGTGCAAGGTCACCGTGAACAAGAAAACCAAACAC
TGCATTTCCTGCAATAAGTGTGTGTCCGGCTTCGACCACCACTGCAAATGGATCAACAACTGCGTGGGAA
GCCGGAATTATTGGTTCTTCTTCAGCACTGTGGCCTCGGCCACAGCTGGCATGCTCTGCCTGATCGCCAT
CCTGCTGTATGTCCTCGTCCAGTACCTCGTGAACCCCAGGGTGCTCCGCACGGACCCCAGGTATGAAGAT
GTCAAGAATATGAACACGTGGCTGCTGTTCCTCCCCCTGTTCCCGGTGCAGGTGCAGACTCTGATAGTCG
TGATCATCAGGATGCTCGTGCTCCTGCTGGACCTTCTTGGCTTGGTGCAGCTGGGCCAGCTGCTCATCTT
CCACATCTACCTGAAGGCCAAGAAGATGACCACCTTTGAGTATCTCATTAATACCCGCAAAGAAGAGAGT
TCAAAACATCAAGCAGTGAGGAAAGATCCATACGTGCAAATGGACAAAGGATTTCTCCAGCAAGGAGCTG
GCGCCCTGGGCTCATCTGCACAGGGAGTCAAGGCCAAGAGCTCCCTGCTGATTTACAAATGCCCATGTCA
CTTCTGCACTTCAGTAAACCAGGACGGGGATTCGAAGGCACAGGAAGCAGATGATGCCCCGAGTACATCT
ACACTTGGGCTGCAACAAGAAACAACAGAGCCCATGAAAACTGACAGTGCTGAAAGTGAAGACTGA

Translation (371 aa):
MDTRSGSQCSVTPEAIRNNEELVLPPRISRVNGWSLPLHYFRVVTWAVFVGLSLATFRIFIPLLPHSWKY
IAYVVTGGIFSFHLVVHLIASCIDPADSNVRLMKNYSQPMPLFDRSKHAHVIQNQFCHLCKVTVNKKTKH
CISCNKCVSGFDHHCKWINNCVGSRNYWFFFSTVASATAGMLCLIAILLYVLVQYLVNPRVLRTDPRYED
VKNMNTWLLFLPLFPVQVQTLIVVIIRMLVLLLDLLGLVQLGQLLIFHIYLKAKKMTTFEYLINTRKEES
SKHQAVRKDPYVQMDKGFLQQGAGALGSSAQGVKAKSSLLIYKCPCHFCTSVNQDGDSKAQEADDAPSTS
TLGLQQETTEPMKTDSAESED


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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