NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49618.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49618.1 Public Mus musculus 15 Hhla1 23 108 98 CCDS HistoryNCBI Gene:654498Re-query CCDS DB by CCDS ID:49618.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49618.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100584.2 ENSMUSP00000098149.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100584.2Link to Ensembl Protein Viewer:ENSMUSP00000098149.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100584Re-query CCDS DB by Protein ID:ENSMUSP00000098149
Original member Current member NCBI NM_001145096.1 NP_001138568.1 Accepted alive Link to Nucleotide Sequence:NM_001145096.1Link to Protein Sequence:NP_001138568.1Re-query CCDS DB by Nucleotide ID:NM_001145096Re-query CCDS DB by Protein ID:NP_001138568Link to BLAST:NP_001138568.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138568.1 514 Q3TYV2 514 100% 0 0

Chromosomal Locations for CCDS 49618.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 65923085 65923133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65923860 65924016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65930231 65930305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65930620 65930688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65933237 65933473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65936237 65936464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65941752 65941838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65941944 65942000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65942688 65942771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65948302 65948385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65948482 65948565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65965420 65965500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65966472 65966528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65967344 65967400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65971724 65971783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65972761 65972839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGCAGAGCTTCCTGCTTCATTGTCCTCCAATAAGGCTGTGTATGGGCCTTGCCTGTATCCTCTTTCTCT
GGAATGCAGTGTCTGGTCTTAAAGGAGAAGGCAAGAAAGATAAAGAAATGGCTCTCCCACCTGCAACAGT
GTCTGGAAATGAAGGCCTCAAGAAGGAGAAAAACGGATCCTTTCTTCATGCAGCAGAGTCTGTCTTCAAA
GAAAAAAAGATGGTAAAGGGATTAGAGGTTCTTGCAACTACAGAACTCCCAGCAAGGTCAGTGGATCTGT
CTACACTCAACCTGACCGAGCTTGTGAATGGCATGCTCAATAGAGCTTTAAAAGATAGCAAGCAATTCTT
CTCCGTACTTAGCATCACTTCTTATAGTTCATTTGCCTTTCACAAGGTTTCCGTGGCCATCTACAACATT
TCCAACCCAAAGACAGTCGACCCAGCCAAATTCCCTACCCGGCACTGCTACTGTTTGAGCAATAGGACCA
ATGACTTATCAGATTTCACAGCATTGCTGGTGGACATTGTTGGAAATTCTACAAGCTACCTCACTGAGAT
TTTTAAGTCAACCTCCATCCTCTCTGTGACTCAGACCAATGAATCGGACTGTGTCTTCATCTGTGTGATG
GTGGGAAAGTCAGGAAGGAATCTTTCTGACTTCTGGGAGATGGTGGAGAAATCCCCTGTTATCAACTACA
CATTTACCAGTGGTGTGTCCAGTGTTTTAGCAACTACCAGGGGAACAGCAAGGACTTCAAGGCTCACAAC
TCAAAGCCAGCAGTCACTTCTAAGACCATATTCTGTACGCTGGAGCACACAATGGGTATCTGCTCTGAAG
TCTCTCCCCTGGACAAAGACAAGTGCTCCTTCAGAGAAAGAGTTGGCAGAAAGCAAACAGATGTTTCCAG
AGCTTCCTGTTGGGACCATAGGCACACACAGTAGTGCCCCAAGCTCAAGTAACATGACCAGAACACCATG
GGGGACAAATAGATACACACAAGCACCTACAGTACCCATGCCTATGCCACTAAGTGTGGATGATAGCACA
CCTGAAGGACCACCCTGGGCAAGCCTTCCCTCCACATCAGCCTCCATTGAAGATGCCCAGCAGCTCAGGA
GCACAGGAAATCTGTTGCATCCTACTGGAATACTGACTACACCCAGCCGACTAGCACAGCCCAGCAGGGC
CTCGGGAACACTCATGCCTGGAACACAGACTACAAACCCAACCCAAGCACCAGCTCCTAGAGTCCCTCAG
ACAGATGGTATTCCTGCAGAGTGGCCATTCATCCCTGAGAAAGAGCCAGCCCGGGACCCAGCAGCCCATC
AAGTTTCAAAGTGTCCTCGGCCACTCCTCCAAGAAGAGGCCATTACAGATACTCCTCTGCCCCTGGCCAT
GAAGAAACTCACCCCATGTCTGATGGAACTCTGCCGCTTCTTCCAGCAATGCCTCTGTGCAATCCAAAAG
CGGGATTTCAGTTCAGAAGCCATAAGCAATTGTTACCTGCCAGAGAAAATCAGGAAGCTGATCACACTTC
ATTAG

Translation (514 aa):
MQSFLLHCPPIRLCMGLACILFLWNAVSGLKGEGKKDKEMALPPATVSGNEGLKKEKNGSFLHAAESVFK
EKKMVKGLEVLATTELPARSVDLSTLNLTELVNGMLNRALKDSKQFFSVLSITSYSSFAFHKVSVAIYNI
SNPKTVDPAKFPTRHCYCLSNRTNDLSDFTALLVDIVGNSTSYLTEIFKSTSILSVTQTNESDCVFICVM
VGKSGRNLSDFWEMVEKSPVINYTFTSGVSSVLATTRGTARTSRLTTQSQQSLLRPYSVRWSTQWVSALK
SLPWTKTSAPSEKELAESKQMFPELPVGTIGTHSSAPSSSNMTRTPWGTNRYTQAPTVPMPMPLSVDDST
PEGPPWASLPSTSASIEDAQQLRSTGNLLHPTGILTTPSRLAQPSRASGTLMPGTQTTNPTQAPAPRVPQ
TDGIPAEWPFIPEKEPARDPAAHQVSKCPRPLLQEEAITDTPLPLAMKKLTPCLMELCRFFQQCLCAIQK
RDFSSEAISNCYLPEKIRKLITLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH