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Report for CCDS41010.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41010.1 Public Mus musculus X Xlr4b 23 108 98 CCDS HistoryNCBI Gene:27083Re-query CCDS DB by CCDS ID:41010.1Re-query CCDS DB by GeneID:27083See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41010.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069077.9 ENSMUSP00000064686.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069077.9Link to Ensembl Protein Viewer:ENSMUSP00000064686.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000069077Re-query CCDS DB by Protein ID:ENSMUSP00000064686
Original member Current member EBI ENSMUST00000069103.10 ENSMUSP00000066171.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069103.10Link to Ensembl Protein Viewer:ENSMUSP00000066171.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000069103Re-query CCDS DB by Protein ID:ENSMUSP00000066171
Original member Current member EBI ENSMUST00000081827.3 ENSMUSP00000080511.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081827.3Link to Ensembl Protein Viewer:ENSMUSP00000080511.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000081827Re-query CCDS DB by Protein ID:ENSMUSP00000080511
Original member Current member NCBI NM_001293676.1 NP_001280605.1 Accepted alive Link to Nucleotide Sequence:NM_001293676.1Link to Protein Sequence:NP_001280605.1Re-query CCDS DB by Nucleotide ID:NM_001293676Re-query CCDS DB by Protein ID:NP_001280605Link to BLAST:NP_001280605.1
Original member Current member NCBI NM_001293677.1 NP_001280606.1 Accepted alive Link to Nucleotide Sequence:NM_001293677.1Link to Protein Sequence:NP_001280606.1Re-query CCDS DB by Nucleotide ID:NM_001293677Re-query CCDS DB by Protein ID:NP_001280606Link to BLAST:NP_001280606.1
Original member Current member NCBI NM_001293678.1 NP_001280607.1 Accepted alive Link to Nucleotide Sequence:NM_001293678.1Link to Protein Sequence:NP_001280607.1Re-query CCDS DB by Nucleotide ID:NM_001293678Re-query CCDS DB by Protein ID:NP_001280607Link to BLAST:NP_001280607.1
Original member Current member NCBI NM_001293679.1 NP_001280608.1 Accepted alive Link to Nucleotide Sequence:NM_001293679.1Link to Protein Sequence:NP_001280608.1Re-query CCDS DB by Nucleotide ID:NM_001293679Re-query CCDS DB by Protein ID:NP_001280608Link to BLAST:NP_001280608.1
Original member Current member NCBI NM_001293680.1 NP_001280609.1 Accepted alive Link to Nucleotide Sequence:NM_001293680.1Link to Protein Sequence:NP_001280609.1Re-query CCDS DB by Nucleotide ID:NM_001293680Re-query CCDS DB by Protein ID:NP_001280609Link to BLAST:NP_001280609.1
Original member Current member NCBI NM_021365.3 NP_067340.2 Accepted alive Link to Nucleotide Sequence:NM_021365.3Link to Protein Sequence:NP_067340.2Re-query CCDS DB by Nucleotide ID:NM_021365Re-query CCDS DB by Protein ID:NP_067340Link to BLAST:NP_067340.2

Chromosomal Locations for CCDS 41010.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 73215259 73215355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73216041 73216109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73217723 73217840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73218686 73218785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73219974 73220072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73221867 73221962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73222080 73222148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGGCTTCCAAAATCAAGGGCAGACCTCCCAAGCAACCAAAGGTGACTCCTGCTCTGCCATCTAATGATT
CACAGCAGCTTCATGAAAATAACCCAGGAAACAATCTGGCCCTTGAAACTTGTGGGGAAAGCAGTTCTTC
CCATGGAACAGGTGGACCAAAGCCAGGGCCCAGTAAGAAAACTCTAAATGAAAGGAAGAGAAAGTATGGG
GTGAGTGTAAATAAAACTGTCCAAAACATTGAGTGGAATGTTGACCACTTCTTGAAAGTCCAGCATGAGC
GAAGGCAGGAACTTTATAAGGACTATTCTCATCAGTTTTTGACTTTGGTTATGATGTGGAATATAGATGT
AGACCAAATCAAGAAACAGGCTGGAAAACTCTCTGATATACTTGATGAGCAACAGAAGCTTTTTCAACAA
TTTCAAAGTATTCATATGCAGAAAATAGAAGAATTTAAGGAGTTATGTGATCGACACTTGAAGAATCTAC
AGGCTATTAAGTGTTGTCGCCGAAAAGCTATTATTGAGGAAGCCAGAAAGCTAATGGACTACTTGGAAAA
GAGAGTTACTGAAGAAACTGTTCACGTAAACAAGCAGGAAGCAAAGGATGGTGTTCAATCATCACTTCTA
TCCCTGCTAATCTCGTAA

Translation (215 aa):
MASKIKGRPPKQPKVTPALPSNDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYG
VSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQ
FQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKRVTEETVHVNKQEAKDGVQSSLL
SLLIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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