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Report for CCDS41030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41030.1 Public Mus musculus X Cmc4 23 108 98 CCDS HistoryNCBI Gene:105886298Re-query CCDS DB by CCDS ID:41030.1Re-query CCDS DB by GeneID:105886298See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41030.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033543.13 ENSMUSP00000033543.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033543.13Link to Ensembl Protein Viewer:ENSMUSP00000033543.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033543Re-query CCDS DB by Protein ID:ENSMUSP00000033543
Original member Current member EBI ENSMUST00000120286.1 ENSMUSP00000112753.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120286.1Link to Ensembl Protein Viewer:ENSMUSP00000112753.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120286Re-query CCDS DB by Protein ID:ENSMUSP00000112753
Original member Current member EBI ENSMUST00000149863.2 ENSMUSP00000117381.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000149863.2Link to Ensembl Protein Viewer:ENSMUSP00000117381.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000149863Re-query CCDS DB by Protein ID:ENSMUSP00000117381
Original member Current member NCBI NM_001294277.1 NP_001281206.1 Accepted alive Link to Nucleotide Sequence:NM_001294277.1Link to Protein Sequence:NP_001281206.1Re-query CCDS DB by Nucleotide ID:NM_001294277Re-query CCDS DB by Protein ID:NP_001281206Link to BLAST:NP_001281206.1
Original member Current member NCBI NM_010839.6 NP_034969.1 Accepted alive Link to Nucleotide Sequence:NM_010839.6Link to Protein Sequence:NP_034969.1Re-query CCDS DB by Nucleotide ID:NM_010839Re-query CCDS DB by Protein ID:NP_034969Link to BLAST:NP_034969.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001281206.1 68 Q61908-1 68 100% 0 0
NP_034969.1 68 Q61908-1 68 100% 0 0

Chromosomal Locations for CCDS 41030.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 75405070 75405218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75409546 75409603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (207 nt):
ATGCCACAAAAGGATCCATGCCAGAAACAAGCCTGTGAAATACAAAAATGTTTACAAGCCAACAACTATT
TGGAATCGAAGTGTCAGGCTGTCATCCAAGAACTTCGTAAGTGTTGTGCTCGATATCCCAAAGGAAGATC
TCTTGTCTGCTCAGGATTTGAGAAAGAAGAGGAAGAGAAGTTGGCAATGAAGTCTGGATCCAAGTAA

Translation (68 aa):
MPQKDPCQKQACEIQKCLQANNYLESKCQAVIQELRKCCARYPKGRSLVCSGFEKEEEEKLAMKSGSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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