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Report for CCDS30402.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30402.1 Public Mus musculus X Tceal6 23 108 98 CCDS HistoryNCBI Gene:66104Re-query CCDS DB by CCDS ID:30402.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30402.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033783.1 ENSMUSP00000033783.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033783.1Link to Ensembl Protein Viewer:ENSMUSP00000033783.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000033783Re-query CCDS DB by Protein ID:ENSMUSP00000033783
Original member Current member NCBI NM_025355.4 NP_079631.2 Accepted alive Link to Nucleotide Sequence:NM_025355.4Link to Protein Sequence:NP_079631.2Re-query CCDS DB by Nucleotide ID:NM_025355Re-query CCDS DB by Protein ID:NP_079631Link to BLAST:NP_079631.2

Chromosomal Locations for CCDS 30402.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 135208942 135209544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGGAAGAAGTCCGCGGTGAAAACGAAGGCAAGCTGGAAAAGGAGGGAAAGCCAGAAGATGAAGTAGAGC
CTGAAGATGAAGAAAAGTCAGATGAGGAAGAGAAGCCAGACAAGAAAGCAAAGCCAGCACCACGCCAGGG
CAAGCCAGAGGAGGAGGCAAAGCCAGATGAGCAGGGGCAAGATGAGGGGAAGCCCGAGAAGCAGGGAAAG
TCTGACGGGGAGGGCAAGCGCCAAGGGGAGAGCAAGCCCGATTCCCAGGCAAAGTCAGCCAGCGAGGCGC
GGGCTGCAGAAAAGCGCCCTGCTGAAGATTATGTGCCCCGGAAAGCAAAACGAAAAACAGATAGGGGGAC
AGATGATTCTCCCAAGAACTCCCAGGAGGACTTACAGGACAGGCATGTAAGCAGCGAGGAGATGATGAGA
GAGTGCACAGATATGACTAGGGCTCGGGAAGAGTTAAGGAAGAGGCAGAAAATGGGTGGTTTTCACTGGG
TGCCAAGAGATGCACAGGATGCTTTAGTCCCCAGGGGCCAGCGGGGAGTCAGGGGGGTGAGGGGCGGCGG
AGGCAGGAGCCAGAGGGGCCTACATGACATCCCATACCTTTAA

Translation (200 aa):
MEEVRGENEGKLEKEGKPEDEVEPEDEEKSDEEEKPDKKAKPAPRQGKPEEEAKPDEQGQDEGKPEKQGK
SDGEGKRQGESKPDSQAKSASEARAAEKRPAEDYVPRKAKRKTDRGTDDSPKNSQEDLQDRHVSSEEMMR
ECTDMTRAREELRKRQKMGGFHWVPRDAQDALVPRGQRGVRGVRGGGGRSQRGLHDIPYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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