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Report for CCDS37643.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37643.1 Public Mus musculus 17 Tomm6 23 108 98 CCDS HistoryNCBI Gene:66119Re-query CCDS DB by CCDS ID:37643.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37643.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113301.1 ENSMUSP00000108926.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113301.1Link to Ensembl Protein Viewer:ENSMUSP00000108926.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113301Re-query CCDS DB by Protein ID:ENSMUSP00000108926
Original member Current member EBI ENSMUST00000113302.9 ENSMUSP00000108927.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113302.9Link to Ensembl Protein Viewer:ENSMUSP00000108927.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113302Re-query CCDS DB by Protein ID:ENSMUSP00000108927
Original member Current member NCBI NM_001164729.1 NP_001158201.1 Accepted alive Link to Nucleotide Sequence:NM_001164729.1Link to Protein Sequence:NP_001158201.1Re-query CCDS DB by Nucleotide ID:NM_001164729Re-query CCDS DB by Protein ID:NP_001158201Link to BLAST:NP_001158201.1
Original member Current member NCBI NM_025365.3 NP_079641.1 Accepted alive Link to Nucleotide Sequence:NM_025365.3Link to Protein Sequence:NP_079641.1Re-query CCDS DB by Nucleotide ID:NM_025365Re-query CCDS DB by Protein ID:NP_079641Link to BLAST:NP_079641.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158201.1 74 Q9CQN3 74 100% 0 0
NP_079641.1 74 Q9CQN3 74 100% 0 0

Chromosomal Locations for CCDS 37643.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 47687192 47687288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47687899 47688026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (225 nt):
ATGGCTTCCAGCGGAGTGACGGTGAGCGCCGCCGGGTCGGCCAGCGAGGCCTCAGAGGTTCCAGACAACG
TGGGAGACTGGCTCCGCGGTGTCTTCCGCTTCGCCACCGATCGAAACGACTTCCGGAGGAACTTGATCCT
CAATTTGGGACTCTTTGCTGCGGGAGTCTGGCTGGCCAGGAACTTGAGTGACATTGATTTGATGGCCCCT
CAGCCAGGGGTGTAG

Translation (74 aa):
MASSGVTVSAAGSASEASEVPDNVGDWLRGVFRFATDRNDFRRNLILNLGLFAAGVWLARNLSDIDLMAP
QPGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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