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Report for CCDS25951.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25951.1 Public Mus musculus 12 Nemf 23 108 98 CCDS HistoryNCBI Gene:66244Re-query CCDS DB by CCDS ID:25951.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25951.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021368.9 ENSMUSP00000021368.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021368.9Link to Ensembl Protein Viewer:ENSMUSP00000021368.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021368Re-query CCDS DB by Protein ID:ENSMUSP00000021368
Original member Current member NCBI NM_025441.3 NP_079717.2 Accepted alive Link to Nucleotide Sequence:NM_025441.3Link to Protein Sequence:NP_079717.2Re-query CCDS DB by Nucleotide ID:NM_025441Re-query CCDS DB by Protein ID:NP_079717Link to BLAST:NP_079717.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079717.2 1064 Q8CCP0-1 1064 100% 0 0

Chromosomal Locations for CCDS 25951.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 69312003 69312080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69312255 69312334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69312425 69312468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69312566 69312666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69314416 69314448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69316244 69316438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69316743 69316820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69318027 69318180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69320373 69320422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69320527 69320569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69322101 69322350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69324232 69324352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69324433 69324491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69324919 69324976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69327634 69327746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69331088 69331150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69331872 69331975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69337819 69337907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69339719 69339782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69340891 69341076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69341273 69341481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69341573 69341650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69344129 69344191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69344680 69344755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69344909 69344979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69346316 69346389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69348851 69348937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69352307 69352374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69353794 69353942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69354647 69354772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69356030 69356132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69356279 69356347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69357051 69357109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3195 nt):
ATGAAGAGCCGGTTCAGCACGGTTGACCTCCGCGCAGTGCTCGCGGAACTGAATGCGAGCTTGCTAGGAA
TGAGAGTAAACAACGTTTATGATGTGGATAACAAGACATATCTTATTCGGCTTCAAAAACCTGATTTTAA
AGCTACACTGTTACTTGAGTCTGGTATACGTATTCATACAACAGAATTTGAGTGGCCTAAGAACATGATG
CCGTCGAGTTTTGCCATGAAGTGTCGAAAACATTTGAAGAGTCGGAGATTAGTCAGTGCAAAACAGCTTG
GTGTGGACAGAATTGTGGATTTCCAGTTTGGAAGTGACGAAGCTGCTTATCACTTAATCATTGAGCTCTA
TGACAGGGGGAACATTGTTCTTACAGATTATGAGTACCTAATTTTAAATATCCTAAGGTTTCGAACTGAT
GAAGCAGATGATGTTAAGTTTGCTGTTCGTGAACGCTATCCCATAGATCATGCCAGAGCTGCTGAACCTT
TGCTGACTTTGGAAAGGTTGACTGAAGTAATAGCTGCTGCTCCTAAAGGTGAAGTGCTGAAGAGAGTTCT
TAACCCATTACTTCCCTATGGACCAGCTCTTATTGAGCACTGTCTTATAGAAAGTGGATTCTCTGGCAAT
GCTAAAGTGGATGAAAAACTTGAGAGCAAAGATATTGAAAAGATACTGGTTTGTGTACAGAGGGCAGAAG
ACTATTTGAGGAAAACATCCAACTTCAATGGAAAGGGCTATATAATTCAGAAAAGAGAGGCAAAACCAAG
CCTGGATGCAGATAAACCAGCTGAAGACATACTCACGTATGAGGAGTTTCATCCTTTCTTGTTTTCTCAG
CATTTACAATGTCCATATATAGAATTTGAATCATTTGACAAGGCCGTGGATGAATTTTATTCCAAGATAG
AAGGGCAGAAAATTGACTTAAAAGCTTTACAACAGGAAAAACAAGCACTGAAGAAATTAGATAATGTCCG
AAAGGATCATGAAAACAGATTAGAAGCTCTTCAGCAGGCTCAGGAAATTGATAAACTGAAAGGGGAGCTC
ATAGAGATGAACCTGCAGATAGTGGACAGAGCCATTCAGGTAGTCCGAAGTGCGTTGGCCAACCAGATAG
ACTGGACAGAAATCGGAGTGATTGTGAAAGAAGCTCAAGCTCAAGGAGACCCGGTTGCATGTGCAATCAA
AGAGCTAAAACTGCAAACCAACCACGTTACGATGCTGCTACGAAATCCATACTTGTTATCAGAGGAGGAA
GATGGTGATGGTGATGCCAGCATTGAGAACAGTGATGCTGAAGCACCAAAAGGGAAAAAAAAAAAGCAAA
AGAACAAGCAGCTGCAGAAGCCGCAGAAGAACAAGCCGCTGCTTGTAGATGTGGATCTCAGCCTGTCAGC
CTATGCCAATGCCAAAAAATATTATGATCATAAGAGGTATGCTGCTAAAAAAACCCAGAGGACTGTTGAA
GCTGCTGAGAAGGCATTCAAATCAGCAGAAAAGAAAACAAAGCAAACCTTAAAAGAAGTACAAACAGTTA
CTTCTATCCAAAAAGCAAGAAAAGTGTATTGGTTTGAGAAATTTCTGTGGTTCATTAGTTCAGAGAACTA
TTTAATCATAGGTGGTCGGGATCAGCAGCAGAATGAGATTATTGTGAAAAGATACTTGACACCAGGAGAC
ATTTATGTGCATGCTGATCTTCATGGAGCTACCAGCTGTGTAATTAAGAATCCGACAGGCGAACCCATCC
CTCCACGGACTTTGACTGAAGCAGGCACAATGGCACTTTGCTACAGTGCTGCTTGGGATGCACGTGTTAT
CACTAGTGCTTGGTGGGTGTACCATCATCAGGTGTCTAAAACAGCACCAACAGGAGAATATTTAACAACA
GGAAGCTTCATGATAAGAGGAAAAAAGAATTTCCTTCCTCCTTCATACCTAATGATGGGGTTTAGCTTCC
TTTTTAAGGTAGATGAGTCTTGTGTCTGGAGACATCGAGGTGAACGAAAAGTCAGAGTGCAGGATGAAGA
CATGGAAACACTGACAAGCTGCACAAGTGAACTCATGGCAGAAGAAATGGAACAACTAGAAGGGGGTGAT
AGCAGTGAAGAAGAGACTGAGGAATTACATGGAATGCCTGGAGACGTAGAACTCATGACTCAGGTTGATC
AAGAGGACATTGCTGTGCACAGTGGGAGAGATGAACTAAGCTCTGAAGATGGAGAAGCCAAAGCAGTTAC
AAAAGATCAGGAGCCCATTGGTGAAATGAAGGAAGAAGAGGAAGACACCTTTGAATATCCTGATACTACC
ATTGACTTGTCCCATCTTCAGTCCCAACGGCCTCTACAGAAACTGGCTCCAAGAGAAGAGTCTTTGAACT
CAAATGACAGTAAATCACAGGGCCGAAGACATTTGTCAGCCAAGGAGAGAAGAGAAATGAAAAAGAAAAA
GCTCCCATGTGAGTCAGGGGATTTAGAAGTGATAGAAGAAAAGGACAAAGAGAGAGAAAGTGCTGTGCAC
ACTGAAGCTTACCAAAACACAAGCAAAAATGTGGCAGCTGGACAGCCAATGAAAAGAGGACAGAAGAGTA
AAATGAAAAAAATGAAGGAAAAATACAAAGACCAGGATGATGAAGATCGTGAACTTATTATGAAGTTGCT
GGCATCTGCAGGTTCGAACAAAGAAGAAAAGGGGAAGAAAGGAAAGAAAGGAAAACCAAAAGATGAACCT
GTGAAAAAACCCCCACAGAAACCAAGAGGTGGACAGCGGGTTTTAGATGTTGTTAAAGAACCTCCGTCCC
TGCAGGTTTTAGCTCATGACTTACAAGACTTAGCTGTCGATGATCCACATGATGACAAGGAGGAACACGA
TCTGGATCAGCAGGGGAATGAGGAAAATCTATTTGACTCTTTGACAGGGCAGCCACATCCTGAGGATGTA
CTGATGTTTGCTATTCCAATATGTGCCCCTTACACCATCATGACAAACTATAAATACAAAGTGAAACTTA
CACCTGGAGTTCAGAAAAAGGGGAAAGCTGCGAAGACAGCCTTGAACAGTTTCATGCACTCCAAAGAAGC
CACAGCAAGAGAAAAAGACTTATTCCGAAGTGTGAAGGACACAGATTTATCAAGAAACATTCCTGGAAAA
GTAAAAGTGTCCGCACCTAATCTTCTGCATGTGAAGAGGAAATAG

Translation (1064 aa):
MKSRFSTVDLRAVLAELNASLLGMRVNNVYDVDNKTYLIRLQKPDFKATLLLESGIRIHTTEFEWPKNMM
PSSFAMKCRKHLKSRRLVSAKQLGVDRIVDFQFGSDEAAYHLIIELYDRGNIVLTDYEYLILNILRFRTD
EADDVKFAVRERYPIDHARAAEPLLTLERLTEVIAAAPKGEVLKRVLNPLLPYGPALIEHCLIESGFSGN
AKVDEKLESKDIEKILVCVQRAEDYLRKTSNFNGKGYIIQKREAKPSLDADKPAEDILTYEEFHPFLFSQ
HLQCPYIEFESFDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGEL
IEMNLQIVDRAIQVVRSALANQIDWTEIGVIVKEAQAQGDPVACAIKELKLQTNHVTMLLRNPYLLSEEE
DGDGDASIENSDAEAPKGKKKKQKNKQLQKPQKNKPLLVDVDLSLSAYANAKKYYDHKRYAAKKTQRTVE
AAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFLWFISSENYLIIGGRDQQQNEIIVKRYLTPGD
IYVHADLHGATSCVIKNPTGEPIPPRTLTEAGTMALCYSAAWDARVITSAWWVYHHQVSKTAPTGEYLTT
GSFMIRGKKNFLPPSYLMMGFSFLFKVDESCVWRHRGERKVRVQDEDMETLTSCTSELMAEEMEQLEGGD
SSEEETEELHGMPGDVELMTQVDQEDIAVHSGRDELSSEDGEAKAVTKDQEPIGEMKEEEEDTFEYPDTT
IDLSHLQSQRPLQKLAPREESLNSNDSKSQGRRHLSAKERREMKKKKLPCESGDLEVIEEKDKERESAVH
TEAYQNTSKNVAAGQPMKRGQKSKMKKMKEKYKDQDDEDRELIMKLLASAGSNKEEKGKKGKKGKPKDEP
VKKPPQKPRGGQRVLDVVKEPPSLQVLAHDLQDLAVDDPHDDKEEHDLDQQGNEENLFDSLTGQPHPEDV
LMFAIPICAPYTIMTNYKYKVKLTPGVQKKGKAAKTALNSFMHSKEATAREKDLFRSVKDTDLSRNIPGK
VKVSAPNLLHVKRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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