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Report for CCDS29265.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29265.1 Public Mus musculus 18 Isoc1 23 108 98 CCDS HistoryNCBI Gene:66307Re-query CCDS DB by CCDS ID:29265.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29265.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025503.9 ENSMUSP00000025503.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025503.9Link to Ensembl Protein Viewer:ENSMUSP00000025503.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025503Re-query CCDS DB by Protein ID:ENSMUSP00000025503
Original member Current member NCBI NM_025478.3 NP_079754.2 Accepted alive Link to Nucleotide Sequence:NM_025478.3Link to Protein Sequence:NP_079754.2Re-query CCDS DB by Nucleotide ID:NM_025478Re-query CCDS DB by Protein ID:NP_079754Link to BLAST:NP_079754.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079754.2 297 Q91V64 297 100% 0 0

Chromosomal Locations for CCDS 29265.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 58659492 58659797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58671208 58671327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58671448 58671651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58673250 58673366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58677765 58677911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGGCGGCGGCGGAGCCCTCGGTGGCCGCGCTGGCGGGCGGCGGTGTGGGCGCGGGGGCGCCGTCGGGCG
GCGTGCCGGTGCTCTTCTGCTTCTCGGTGTTCGCGCGGCCCGCGTCGGTGCCCCACGGCGCGGGCTACGA
CGTGCTCATCCAGAAGTTCCTGAGCCTGTACGGCGATCAGCTCGACATGCACCGCAAATTCGTGGTGCAG
CTCTTCGCCGAGGAGTGGGGTCAGTACGTGGACCTGCCCAAGGGCTTCGCGGTGAGCGAGCGCTGCAAGC
TGCGCCTGGTGCCGCTGCAGATCCAGCTTACGACCCTGGGAAATCTCACACCTCCGAGCACTGTGTTTTT
CTGCTGTGACATGCAGGAAAGGTTCCGTCCAGCCATCAAATACTTTGGGGACATCATTAGTGTGGGACAG
AGACTGTTGCAAGGAGCTCGGATCTTAGGGATTCCAGTTATCATAACGGAACAATACCCCAAAGGACTTG
GCAGCACCGTTCAAGAAATCGACTTAACAGGTGTGAAACTGGTTCTTCCAAAGACCAAGTTTTCTATGGT
GTTACCTGAAGTCGAAGCAGCGTTAGCCGAGATTCCTGGCGTCCGGAGTGTCGTGTTGTTTGGAGTAGAA
ACGCACGTGTGTATCCAGCAAACTGCCCTGGAGCTGGTCGGCCGAGGCATCGAGGTTCACATCGTCGCGG
ACGCCACCTCCTCGAGAAGCATGATGGACAGGATGTTTGCTCTTGAGCGTCTTGCCCGCACTGGGATCAT
CGTGACCACTAGTGAGGCTGTCCTCCTACAGCTGGTGGCTGACAAAGACCACCCGAAGTTCAAGGAAATT
CAGAACCTAATTAAGGCGAGTGCCCCGGAGTCGGGTCTGCTTTCTAAAGTGTAG

Translation (297 aa):
MAAAEPSVAALAGGGVGAGAPSGGVPVLFCFSVFARPASVPHGAGYDVLIQKFLSLYGDQLDMHRKFVVQ
LFAEEWGQYVDLPKGFAVSERCKLRLVPLQIQLTTLGNLTPPSTVFFCCDMQERFRPAIKYFGDIISVGQ
RLLQGARILGIPVIITEQYPKGLGSTVQEIDLTGVKLVLPKTKFSMVLPEVEAALAEIPGVRSVVLFGVE
THVCIQQTALELVGRGIEVHIVADATSSRSMMDRMFALERLARTGIIVTTSEAVLLQLVADKDHPKFKEI
QNLIKASAPESGLLSKV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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