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Report for CCDS72790.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72790.1 Public Homo sapiens 1 TTC39A 24 110 108 CCDS HistoryNCBI Gene:22996Re-query CCDS DB by CCDS ID:72790.1Re-query CCDS DB by GeneID:22996See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72790.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000447632.6 ENSP00000393952.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000447632.6Link to Ensembl Protein Viewer:ENSP00000393952.2Re-query CCDS DB by Nucleotide ID:ENST00000447632Re-query CCDS DB by Protein ID:ENSP00000393952
Original member Current member NCBI NM_001297665.1 NP_001284594.1 Accepted alive Link to Nucleotide Sequence:NM_001297665.1Link to Protein Sequence:NP_001284594.1Re-query CCDS DB by Nucleotide ID:NM_001297665Re-query CCDS DB by Protein ID:NP_001284594Link to BLAST:NP_001284594.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001284594.1 613 Q5SRH9-1 613 100% 0 0

Chromosomal Locations for CCDS 72790.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 51288157 51288280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51288839 51288955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51290005 51290119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51290514 51290625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51294391 51294511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51296079 51296170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51301572 51301733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51302357 51302416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51302506 51302573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51303084 51303192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51305081 51305146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51305977 51306076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51309261 51309430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51311254 51311321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51312119 51312195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51312812 51312943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51321721 51321825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51322118 51322161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1842 nt):
ATGGGCCAGAAGGGCCACAAAGACTCCCTTTACCCTTGTGGAGGGACTCCTGAGAGCAGCCTCCATGAGG
CCCTGGACCAGTGCATGACCGCCCTGGACCTCTTCCTCACCAACCAGTTCTCAGAAGCACTCAGCTACCT
CAAGCCCAGAACCAAGGAAAGCATGTACCACTCACTGACATATGCCACCATCCTGGAGATGCAGGCCATG
ATGACCTTTGACCCTCAGGACATCCTGCTTGCCGGCAACATGATGAAGGAGGCACAGATGCTGTGTCAGA
GGCACCGGAGGAAGTCTTCTGTAACAGATTCCTTCAGCAGCCTGGTGAACCGCCCCACGCTGGGCCAATT
CACTGAAGAGGAAATCCACGCTGAGGTCTGCTATGCAGAGTGCCTGCTGCAGCGAGCAGCCCTGACCTTC
CTGCAGGGTTCCTCACACGGAGGGGCAGTCAGGCCCAGAGCCTTGCATGATCCCTCTCACGCCTGCAGCT
GCCCACCTGGGCCAGGCCGTCAGCATCTTTTCCTCCTGCAGGACGAGAACATGGTGAGCTTCATCAAAGG
CGGCATCAAAGTTCGAAACAGCTACCAGACCTACAAGGAGCTGGACAGCCTTGTTCAGTCCTCACAATAC
TGCAAGGGTGAGAACCACCCGCACTTTGAAGGAGGAGTGAAGCTTGGTGTAGGGGCCTTCAACCTGACAC
TGTCCATGCTTCCTACTAGGATCCTGAGGCTGTTGGAGTTTGTGGGGTTTTCAGGAAACAAGGACTATGG
GCTGCTGCAGCTGGAGGAGGGAGCGTCAGGGCACAGCTTCCGCTCTGTGCTCTGTGTCATGCTCCTGCTG
TGCTACCACACCTTCCTCACCTTCGTGCTCGGTACTGGGAACGTCAACATCGAGGAGGCCGAGAAGCTCT
TGAAGCCCTACCTGAACCGGTACCCTAAGGGTGCCATCTTCCTGTTCTTTGCAGGGAGGATTGAAGTCAT
TAAAGGCAACATTGATGCAGCCATCCGGCGTTTCGAGGAGTGCTGTGAGGCCCAGCAGCACTGGAAGCAG
TTCCACCACATGTGCTACTGGGAGCTGATGTGGTGCTTCACCTACAAGGGCCAGTGGAAGATGTCCTACT
TCTACGCCGACCTGCTCAGCAAGGAGAACTGCTGGTCCAAGGCCACCTACATTTACATGAAGGCCGCCTA
CCTCAGCATGTTTGGGAAGGAGGACCACAAGCCGTTCGGGGACGACGAAGTGGAATTATTTCGAGCTGTG
CCAGGCCTGAAGCTCAAGATTGCTGGGAAATCTCTACCCACAGAGAAGTTTGCCATCCGGAAGTCCCGGC
GCTACTTCTCCTCCAACCCTATCTCGCTGCCAGTGCCTGCTCTGGAAATGATGTACATCTGGAACGGCTA
CGCCGTGATTGGGAAGCAGCCGAAACTCACGGATGGGATACTTGAGATTATCACTAAGGCTGAAGAGATG
CTGGAGAAAGGCCCAGAGAACGAGTACTCAGTGGATGACGAGTGCTTGGTGAAATTGTTGAAAGGCCTGT
GTCTGAAATACCTGGGCCGTGTCCAGGAGGCCGAGGAGAATTTTAGGAGCATCTCTGCCAATGAAAAGAA
GATTAAATATGACCACTACTTGATCCCAAACGCCCTGCTGGAGCTGGCCCTGCTGCTTATGGAGCAAGAC
AGAAACGAAGAGGCCATCAAACTTTTGGAATCTGCCAAGCAAAACTACAAGAATTACTCCATGGAGTCAA
GGACACACTTTCGAATCCAGGCAGCCACACTCCAAGCCAAGTCTTCCCTAGAGAACAGCAGCAGATCCAT
GGTCTCATCAGTGTCCTTGTAG

Translation (613 aa):
MGQKGHKDSLYPCGGTPESSLHEALDQCMTALDLFLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAM
MTFDPQDILLAGNMMKEAQMLCQRHRRKSSVTDSFSSLVNRPTLGQFTEEEIHAEVCYAECLLQRAALTF
LQGSSHGGAVRPRALHDPSHACSCPPGPGRQHLFLLQDENMVSFIKGGIKVRNSYQTYKELDSLVQSSQY
CKGENHPHFEGGVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKDYGLLQLEEGASGHSFRSVLCVMLLL
CYHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEVIKGNIDAAIRRFEECCEAQQHWKQ
FHHMCYWELMWCFTYKGQWKMSYFYADLLSKENCWSKATYIYMKAAYLSMFGKEDHKPFGDDEVELFRAV
PGLKLKIAGKSLPTEKFAIRKSRRYFSSNPISLPVPALEMMYIWNGYAVIGKQPKLTDGILEIITKAEEM
LEKGPENEYSVDDECLVKLLKGLCLKYLGRVQEAEENFRSISANEKKIKYDHYLIPNALLELALLLMEQD
RNEEAIKLLESAKQNYKNYSMESRTHFRIQAATLQAKSSLENSSRSMVSSVSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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