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Report for CCDS19254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19254.1 Public Mus musculus 5 Tmem128 23 108 98 CCDS HistoryNCBI Gene:66309Re-query CCDS DB by CCDS ID:19254.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19254.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087511.9 ENSMUSP00000084788.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087511.9Link to Ensembl Protein Viewer:ENSMUSP00000084788.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000087511Re-query CCDS DB by Protein ID:ENSMUSP00000084788
Original member Current member EBI ENSMUST00000119047.7 ENSMUSP00000113758.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119047.7Link to Ensembl Protein Viewer:ENSMUSP00000113758.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119047Re-query CCDS DB by Protein ID:ENSMUSP00000113758
Original member Current member NCBI NM_001356960.1 NP_001343889.1 Accepted alive Link to Nucleotide Sequence:NM_001356960.1Link to Protein Sequence:NP_001343889.1Re-query CCDS DB by Nucleotide ID:NM_001356960Re-query CCDS DB by Protein ID:NP_001343889Link to BLAST:NP_001343889.1
Original member Current member NCBI NM_025480.4 NP_079756.2 Accepted alive Link to Nucleotide Sequence:NM_025480.4Link to Protein Sequence:NP_079756.2Re-query CCDS DB by Nucleotide ID:NM_025480Re-query CCDS DB by Protein ID:NP_079756Link to BLAST:NP_079756.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343889.1 163 Q9CZB9 163 100% 0 0
NP_079756.2 163 Q9CZB9 163 100% 0 0

Chromosomal Locations for CCDS 19254.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 38260402 38260492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38261997 38262138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38264812 38264970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38267179 38267278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGGACGCTCCGTGGGCTCGGGAGCAGCTACGGCGGCGTTACCTGTTTCCTTCCGAAGTAGAGCTGGACT
GCGAGGACGAGGCCAAGCCGGAAACACCCACAGCTGTTGAGAAAAAGGAGCGACCTCTTCCAAGACTTAA
CATTCATTCTGGATTCTGGATTTTGGCATCCATCGTTGTGACCTATTATGTTGACTTCTTTAAAACCTTT
AAAGAAAATTTTCACACCAATAGTTGGTTTCTCTTTGGCGGAGCCTTGTTATTTGTCAGCCTGTCAATTG
CATTTTACTGCATAGTCTATCTGGAATGGTACCGTGGGATTGAAGAATATGATGTCAAATACCCAACACT
GGTGCCCATCACAACTGCAACTTTCATTGCGGCAGGGATTTGCTTCAACCTGGCTCTGTGGAATGTGTGG
TCATTTTTCACTCCCTTGCTGCTGTTCACCCAGTTTATGGGGGTCGTGATGTTCATCTCACTCCTCGGAT
AA

Translation (163 aa):
MDAPWAREQLRRRYLFPSEVELDCEDEAKPETPTAVEKKERPLPRLNIHSGFWILASIVVTYYVDFFKTF
KENFHTNSWFLFGGALLFVSLSIAFYCIVYLEWYRGIEEYDVKYPTLVPITTATFIAAGICFNLALWNVW
SFFTPLLLFTQFMGVVMFISLLG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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