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Report for CCDS37757.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37757.1 Public Mus musculus 18 Srp19 23 108 98 CCDS HistoryNCBI Gene:66384Re-query CCDS DB by CCDS ID:37757.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37757.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072576.9 ENSMUSP00000072386.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072576.9Link to Ensembl Protein Viewer:ENSMUSP00000072386.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000072576Re-query CCDS DB by Protein ID:ENSMUSP00000072386
Original member Current member NCBI NM_025527.3 NP_079803.2 Accepted alive Link to Nucleotide Sequence:NM_025527.3Link to Protein Sequence:NP_079803.2Re-query CCDS DB by Nucleotide ID:NM_025527Re-query CCDS DB by Protein ID:NP_079803Link to BLAST:NP_079803.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079803.2 144 Q9D7A6 144 97.2222% 0 4

Chromosomal Locations for CCDS 37757.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 34331219 34331259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34331750 34331825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34334293 34334364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34334457 34334568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34336099 34336232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGGCTTGCGCGGCCGCGCGGTCCCCGGCCGACCAGGACAGGTTTATTTGTATCTACCCCGCTTATTTAA
ATAATAAGAAGACCATAGCTGAGGGGAGACGGATCCCTATAAGTAAGGCTGTAGAAAACCCTACAGCTAC
TGAGATTCAAGATGTATGCTCAGCAGTTGGACTGAATGCCTTTCTGGAGAAAAACAAAATGTACTCCAGA
GAATGGAACCGTGATGTTCAGTTTCGAGGCAGAGTCCGGGTACAGCTCAAACAGGAAGATGGCAGCCTCT
GTCTTGTACAGTTCCCGTCACGTAAGTCAGTGATGCTATATGTAGCAGAAATGATACCCAAGCTAAAAAC
ACGGACACAGAAATCAGGAGGTGCCGACCCAAGTCTTCAGCAAGGAGAGGGGAGTAAAAAAGGGAAAGGA
AAGAAGAAGAAATGA

Translation (144 aa):
MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNAFLEKNKMYSR
EWNRDVQFRGRVRVQLKQEDGSLCLVQFPSRKSVMLYVAEMIPKLKTRTQKSGGADPSLQQGEGSKKGKG
KKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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