NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27594.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27594.1 Public Mus musculus 15 Commd5 23 108 98 CCDS HistoryNCBI Gene:66398Re-query CCDS DB by CCDS ID:27594.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27594.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068407.5 ENSMUSP00000069159.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068407.5Link to Ensembl Protein Viewer:ENSMUSP00000069159.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000068407Re-query CCDS DB by Protein ID:ENSMUSP00000069159
Original member Current member EBI ENSMUST00000109793.2 ENSMUSP00000105416.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109793.2Link to Ensembl Protein Viewer:ENSMUSP00000105416.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109793Re-query CCDS DB by Protein ID:ENSMUSP00000105416
Original member NCBI NM_025536.2 NP_079812.1 Updated not alive Link to Nucleotide Sequence:NM_025536.2Link to Protein Sequence:NP_079812.1Re-query CCDS DB by Nucleotide ID:NM_025536Re-query CCDS DB by Protein ID:NP_079812
Current member NCBI NM_025536.3 NP_079812.1 Accepted alive Link to Nucleotide Sequence:NM_025536.3Link to Protein Sequence:NP_079812.1Re-query CCDS DB by Nucleotide ID:NM_025536Re-query CCDS DB by Protein ID:NP_079812Link to BLAST:NP_079812.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079812.1 224 Q8R395 224 99.5536% 0 1

Chromosomal Locations for CCDS 27594.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76900405 76901079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGTCTGCGTTGGGGGCTGCGGCTCCATACTTACACCATCCAACTGACAGTCACAGCGGCCGGGTCAGTT
TCCTGGGTTCCCAGCCCTCTGCAGAAGTGACGGCAGTGGCCCAGCTCTTGAAGGACTTAGACAGGAGCAC
CTTCAGAAAGTTGTTGAAACTCGTAGTCGGGGCCCTCCATGGGAAAGACTGCAGAGAGGCCGTGCAGCAC
CTTGGTGCCAGCGCCAACCTGTCAGAGGAGCGTCTGGCCGTCCTGCTGGCGGGCACACACACCCTGCTCC
AGCAGGCTCTCCGGCTGCCCCCTGCCAGTCTGAAACCAGATGCCTTCCAGGACGAACTCCAGGAACTTGG
CATTCCCCAAGATATGATTGGAGATCTGGCCAGTTTGGCATTTGGGAGTCAACGCCCTCTTCTCGACTCT
GTAGCCCAGCAGCAGGGATCCTCGCTGCCTCGTGTGTCGAATTTCCGGTGGCGGGTGGATGTGGCCATCT
CAACCAGTGCTCAGTCCCGCTCCCTGCAACCGAGTGTTCTCATGCAGCTGAAGCTCACAGATGGATCGGC
ACACCGCTTCGAGGTGCCCATAGCCAAATTCCAGGAGCTGCGCTACAGCGTGGCGTTGGTCCTTAAGGAG
ATGGCAGAGCTGGAGAGAAAGTGTGAGCGCAAACTGCAGGACTGA

Translation (224 aa):
MSALGAAAPYLHHPTDSHSGRVSFLGSQPSAEVTAVAQLLKDLDRSTFRKLLKLVVGALHGKDCREAVQH
LGASANLSEERLAVLLAGTHTLLQQALRLPPASLKPDAFQDELQELGIPQDMIGDLASLAFGSQRPLLDS
VAQQQGSSLPRVSNFRWRVDVAISTSAQSRSLQPSVLMQLKLTDGSAHRFEVPIAKFQELRYSVALVLKE
MAELERKCERKLQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH