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Report for CCDS48628.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48628.1 Public Mus musculus 10 Adamtsl5 23 108 98 CCDS HistoryNCBI Gene:66548Re-query CCDS DB by CCDS ID:48628.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48628.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095446.9 ENSMUSP00000093097.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095446.9Link to Ensembl Protein Viewer:ENSMUSP00000093097.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095446Re-query CCDS DB by Protein ID:ENSMUSP00000093097
Original member NCBI NM_001285435.1 NP_001272364.1 Updated not alive Link to Nucleotide Sequence:NM_001285435.1Link to Protein Sequence:NP_001272364.1Re-query CCDS DB by Nucleotide ID:NM_001285435Re-query CCDS DB by Protein ID:NP_001272364
Current member NCBI NM_001285435.2 NP_001272364.1 Accepted alive Link to Nucleotide Sequence:NM_001285435.2Link to Protein Sequence:NP_001272364.1Re-query CCDS DB by Nucleotide ID:NM_001285435Re-query CCDS DB by Protein ID:NP_001272364Link to BLAST:NP_001272364.1

Chromosomal Locations for CCDS 48628.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80341155 80341456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80341589 80341660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80341743 80341941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80342059 80342222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80342307 80342393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80342909 80343020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80343599 80343726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80344833 80344941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80345043 80345103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80345322 80345413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80345513 80345644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGGCAATTCACCCTGACCCTGCTCTTCACTGCCTCTTGGTAACCCTGTGCTCCCTCAAACCCCGCCTCT
TCCCGCTTCTTCCGTTCTTGCTGTGGACTCTCCTGAGCTGTGATTTGAGGGGTGCTGCCCAGGGTCCGGG
AGAGTGGACGCCCTGGGGGTCTTGGAGCAGGTGTTCCAGCTCTTGTGGTCGGGGCGTCTCAGTGCGCAGA
CGCCAATGTGTCCGACTTCCCGGAGAGGAACTTTGTTGGGGCGACAGCCATGAATACCGGGTGTGCCAGC
TGCCGGACTGCCCTCCAGGGACCACACCATTCCGAGACCTGCAGTGTTCTCTCTACAATGGCCACCCTGT
CCTGGACACCCAGAAAACCTACCAGTGGGTGCCCTTCCACGGGGCGCCCAATGTGTGTGACCTCAACTGC
CTAGCTGAAGGCCACGCCTTCTACCACAGCTTTGGCCGCGTGCTGGATGGCACCCCCTGCACCCCGGGTA
CCCAGGGTCTCTGCGTGGCAGGCCGCTGTCTGAGCGCAGGCTGTGACGGGATACTGGGCTCCGGCACCCT
CGAGGACCGCTGCGGCCTCTGTGGTGGCGCTAACGACTCTTGCCTGTTCGTGCAGCGCGTGTTCCGCGAC
GCCGGTGCCTTCGCCGGCTTCTGGAATGTGACTTTGATCCCCGAGGGCGCCAGGCACATCCGCGTAGCAC
AGCGCAGCCACAACCACCTGGCGCTGGTTACCCGCGGCGGGCACTACGTGCTCAACGGTGATGGGGTGCT
CAGCCCGCCTGGCACCTACGAGGCTGCGGGCACCCGAGTGGTTTACACCCGGAGTGCGGGCCCAGAGGAG
ACTCTGCAGGCGACCGGCCCCACCTCCCAGGAGCTGCTGTTACAGGTGCTGCTGCGGGAGCCCAACCCAG
GCGTACACTTCGAGTTCTGGCTGCCCCGGGAGCGCTATGGCCCCTTTCAGGCTCAGGTGCAGGCCCTGGG
CTGGCCCTTGCGACAGCCTCAGCCTCGGGAGGTGGAGCCACAGCCTGCAGAGACTCCTGTAGTCCCCGAG
GCCATCCCTGCCCGTGTTGCATCCCTGCCACCAGACCCCTGCGGGCCATGCCCCGACAGCCGTGGTCGCG
CACACCGGCTTCTTCACTACTGTGGCAGCGACTTTGTGTTCCAGGCCCGTGTGCTGGGCCGCCACCGCCA
GGCCCAGGAGACCCGCTACGAAGTGCGGGTCTTGCTCATCTACAAAAGCCGCACGCCTCTGCGTACTCGA
GAATATGTATGGGCACCAGGCCACTGTCCGTGCCCACCACTGGCCCCACACCGAGAATACCTGTTGGCTG
CCAGGCGACTCGTAAGCCCTGATGGCACGCAGGATCGGCTACTGCTGCCTCACGCTGGCTATGCTCGACT
CTGGAGTCCCGCGGAGGACAGCAGAGTTCGGCTGGCTGCCCGGCGCTGTCCAGTCTAA

Translation (485 aa):
MAIHPDPALHCLLVTLCSLKPRLFPLLPFLLWTLLSCDLRGAAQGPGEWTPWGSWSRCSSSCGRGVSVRR
RQCVRLPGEELCWGDSHEYRVCQLPDCPPGTTPFRDLQCSLYNGHPVLDTQKTYQWVPFHGAPNVCDLNC
LAEGHAFYHSFGRVLDGTPCTPGTQGLCVAGRCLSAGCDGILGSGTLEDRCGLCGGANDSCLFVQRVFRD
AGAFAGFWNVTLIPEGARHIRVAQRSHNHLALVTRGGHYVLNGDGVLSPPGTYEAAGTRVVYTRSAGPEE
TLQATGPTSQELLLQVLLREPNPGVHFEFWLPRERYGPFQAQVQALGWPLRQPQPREVEPQPAETPVVPE
AIPARVASLPPDPCGPCPDSRGRAHRLLHYCGSDFVFQARVLGRHRQAQETRYEVRVLLIYKSRTPLRTR
EYVWAPGHCPCPPLAPHREYLLAARRLVSPDGTQDRLLLPHAGYARLWSPAEDSRVRLAARRCPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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