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Report for CCDS75513.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75513.1 Public Homo sapiens 6 TPD52L1 24 110 108 CCDS HistoryNCBI Gene:7164Re-query CCDS DB by CCDS ID:75513.1Re-query CCDS DB by GeneID:7164See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75513.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000527711.5 ENSP00000436953.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000527711.5Link to Ensembl Protein Viewer:ENSP00000436953.1Re-query CCDS DB by Nucleotide ID:ENST00000527711Re-query CCDS DB by Protein ID:ENSP00000436953
Original member Current member NCBI NM_001300994.3 NP_001287923.1 Accepted alive Link to Nucleotide Sequence:NM_001300994.3Link to Protein Sequence:NP_001287923.1Re-query CCDS DB by Nucleotide ID:NM_001300994Re-query CCDS DB by Protein ID:NP_001287923Link to BLAST:NP_001287923.1

Chromosomal Locations for CCDS 75513.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125153952 125153970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125220078 125220193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125229118 125229266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125248282 125248383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125257098 125257158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125262834 125262962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGGAGGCGCAGGCACAAGGTTTGTTGGAGACTGAACCGTTGCAAGGAACAGACGAAGATGCAGTAGCCA
GTGCTGACTTCTCTAGCATGCTCTCTGAGGAGGAAAAGGAAGAGTTAAAAGCAGAGTTAGTTCAGCTAGA
AGACGAAATTACAACACTACGACAAGTTTTGTCAGCGAAAGAAAGGCATCTAGTTGAGATAAAACAAAAA
CTCGGCATGAACCTGATGAATGAATTAAAACAGAACTTCAGCAAAAGCTGGCATGACATGCAGACTACCA
CTGCCTACAAGAAAACACATGAAACCCTGAGTCACGCAGGGCAAAAGGCAACTGCAGCTTTCAGCAACGT
TGGAACGGCCATCAGCAAGAAGTTCGGAGACATGAGGAATTCTCCTACTTTCAAATCATTTGAGGAGAGG
GTTGAGACAACTGTCACAAGCCTCAAGACGAAAGTAGGCGGTACGAACCCTAATGGAGGCAGTTTTGAGG
AGGTCCTCAGCTCCACGGCCCATGCCAGTGCCCAGAGCTTGGCAGGAGGCTCCCGGCGGACCAAGGAGGA
GGAGCTGCAGTGCTAA

Translation (191 aa):
MEAQAQGLLETEPLQGTDEDAVASADFSSMLSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQK
LGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMRNSPTFKSFEER
VETTVTSLKTKVGGTNPNGGSFEEVLSSTAHASAQSLAGGSRRTKEEELQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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