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Report for CCDS28064.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28064.1 Public Mus musculus 16 Tmem41a 23 108 98 CCDS HistoryNCBI Gene:66664Re-query CCDS DB by CCDS ID:28064.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28064.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023562.8 ENSMUSP00000023562.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023562.8Link to Ensembl Protein Viewer:ENSMUSP00000023562.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023562Re-query CCDS DB by Protein ID:ENSMUSP00000023562
Original member Current member NCBI NM_025693.4 NP_079969.1 Accepted alive Link to Nucleotide Sequence:NM_025693.4Link to Protein Sequence:NP_079969.1Re-query CCDS DB by Nucleotide ID:NM_025693Re-query CCDS DB by Protein ID:NP_079969Link to BLAST:NP_079969.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079969.1 264 Q9D8U2 264 100% 0 0

Chromosomal Locations for CCDS 28064.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 21934825 21935045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21936981 21937119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21937933 21938094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21946001 21946154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21947368 21947486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGCGCGCGCTGCTCGGCTTGCTCCTCGTATTCGGAGGCTGCACCTTCGCATTATACCTGCTCTCCACGC
GGCTGCCCTTGGGGCCGAGGCTGGCGGCGGCCGGGGAGCCCGAAGGCCGGTCGCTGTGGTTCCCCTCCGA
TCTGGCAGAGCTGCGGGAGCTCTCTGAAGTTCTTCGAGAGTACCGGAAAGAGCACCAGGCCTATGTGTTC
CTGCTCTTTTGCAGTGCCTACCTCTACAAGCAGGGCTTTGCCATCCCTGGCTCCAGCTTCCTGAATGTTT
TGGCTGGTGCCTTGTTCGGGCCATGGCTGGGACTTTTGCTGTGCTGCGTGTTGACATCCGTGGGTGCCAC
AGGCTGCTACCTGCTTTCCAGTCTTTTCGGCAAACAGCTGGTCATCTCCTACTTTCCTGATAAAGTGGCC
CTGCTGCAGAAGAAGGTGGAGGAGAACCGAAACAGCCTGTTCTTTTTCCTGCTGTTCCTCAGACTCTTCC
CCATGACACCAAACTGGTTCTTGAACCTCTCGGCCCCGATTCTGAACATCCCCATTGTGCAGTTTTTCTT
CTCAGTGCTCATCGGTTTGATCCCTTACAATTTCATCTGCGTGCAGACGGGCTCCATCCTCTCCACCCTC
ACCTCTCTGGATGCCCTCTTCTCTTGGGAGACTGTCTTGAAGCTCTTGGCCATCGCCCTGGTCGCTTTGG
TTCCGGGAACGCTCATCAAAAAATTTAGCCAGAAGCGCCTGGCGCTGAGTGAAACAAGCGACATCGGCCA
CCCAGACCGCAGGAAGGACGCATGA

Translation (264 aa):
MRALLGLLLVFGGCTFALYLLSTRLPLGPRLAAAGEPEGRSLWFPSDLAELRELSEVLREYRKEHQAYVF
LLFCSAYLYKQGFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATGCYLLSSLFGKQLVISYFPDKVA
LLQKKVEENRNSLFFFLLFLRLFPMTPNWFLNLSAPILNIPIVQFFFSVLIGLIPYNFICVQTGSILSTL
TSLDALFSWETVLKLLAIALVALVPGTLIKKFSQKRLALSETSDIGHPDRRKDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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