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Report for CCDS18167.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18167.1 Public Mus musculus 4 Msantd3 23 108 98 CCDS HistoryNCBI Gene:66665Re-query CCDS DB by CCDS ID:18167.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18167.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061135.7 ENSMUSP00000056551.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061135.7Link to Ensembl Protein Viewer:ENSMUSP00000056551.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000061135Re-query CCDS DB by Protein ID:ENSMUSP00000056551
Original member Current member EBI ENSMUST00000064807.8 ENSMUSP00000065785.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064807.8Link to Ensembl Protein Viewer:ENSMUSP00000065785.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000064807Re-query CCDS DB by Protein ID:ENSMUSP00000065785
Original member Current member EBI ENSMUST00000107704.1 ENSMUSP00000103332.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107704.1Link to Ensembl Protein Viewer:ENSMUSP00000103332.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107704Re-query CCDS DB by Protein ID:ENSMUSP00000103332
Original member Current member NCBI NM_001145924.1 NP_001139396.1 Accepted alive Link to Nucleotide Sequence:NM_001145924.1Link to Protein Sequence:NP_001139396.1Re-query CCDS DB by Nucleotide ID:NM_001145924Re-query CCDS DB by Protein ID:NP_001139396Link to BLAST:NP_001139396.1
Original member Current member NCBI NM_001145925.1 NP_001139397.1 Accepted alive Link to Nucleotide Sequence:NM_001145925.1Link to Protein Sequence:NP_001139397.1Re-query CCDS DB by Nucleotide ID:NM_001145925Re-query CCDS DB by Protein ID:NP_001139397Link to BLAST:NP_001139397.1
Original member Current member NCBI NM_028137.3 NP_082413.2 Accepted alive Link to Nucleotide Sequence:NM_028137.3Link to Protein Sequence:NP_082413.2Re-query CCDS DB by Nucleotide ID:NM_028137Re-query CCDS DB by Protein ID:NP_082413Link to BLAST:NP_082413.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139396.1 275 Q9CR78 275 100% 0 0
NP_001139397.1 275 Q9CR78 275 100% 0 0
NP_082413.2 275 Q9CR78 275 100% 0 0

Chromosomal Locations for CCDS 18167.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 48552413 48552830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48560844 48561253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGCAAAACAACGAAATCATTAAACCTGCCAAGTACTTCTCGGAGCTGGAGAAGAGCATCTTGCTTGCCT
TGGTAGAGAAGTACAAGTATGTGTTGGAATGCAAGAAGAGCGACGCGCGGACTATTGCTCTCAAGCAGCG
GACCTGGCAGGCCTTGGCCCACGAGTACAACTCGCAGCCCAGCGTGTCGCTGCGGGACTTCAAACAGCTC
AAGAAGTGCTGGGAGAACATCAAGGCTCGGACCAAAAAAATTATGGCCCACGAGAGGCGGGAGAAGGTGA
AGCGCAGCGGGAGCCCGTTGCTGAGCAGCCACGTCCTGGACAAGGAGAAGATCAGCAGCATGCTGCCGGA
GCAACTGTACTTCCTTCAGAGCCCACCGGAGGAGGAGCCCGAATACCACCAGGATGCGGCCGCCCAAGAG
TCCTTTGCTGTTTCAAATCGAGAACTGTGCGAGGATGAGAAAGAGTTCGGGCCCTTTCCGGTCTGTGAGG
GGACCTCACAACCCGAACCTTCATGCTCAGCCGTCAGGATAACCGCCAATAAAAACTACAGGAGCAAAAC
CCCTCAGGAAGGTGCTTTAAAGAAAATGCACGAGGAGGAGCACCATCAGCAGATGTCCATCTTACAGCTG
CAGCTGATCCAAATGAACGAGGTGCACGTGGCCAAAATCCAGCAGATCGAGCGCGAGTGCGAGATGGCCG
AGGAGGAGCACCGGATCAAAATGGAAGTCCTCAATAAAAAGAAGATGTACTGGGAGAGGAAACTGCAGAC
TTTTACCAAGGAGTGGCCCGTCTCCTCGTTTAACCGGCCCTTTCCCAATTCACCCTAA

Translation (275 aa):
MQNNEIIKPAKYFSELEKSILLALVEKYKYVLECKKSDARTIALKQRTWQALAHEYNSQPSVSLRDFKQL
KKCWENIKARTKKIMAHERREKVKRSGSPLLSSHVLDKEKISSMLPEQLYFLQSPPEEEPEYHQDAAAQE
SFAVSNRELCEDEKEFGPFPVCEGTSQPEPSCSAVRITANKNYRSKTPQEGALKKMHEEEHHQQMSILQL
QLIQMNEVHVAKIQQIERECEMAEEEHRIKMEVLNKKKMYWERKLQTFTKEWPVSSFNRPFPNSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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