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Report for CCDS23263.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23263.1 Public Mus musculus 9 Spesp1 23 108 98 CCDS HistoryNCBI Gene:66712Re-query CCDS DB by CCDS ID:23263.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23263.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056949.4 ENSMUSP00000058522.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056949.4Link to Ensembl Protein Viewer:ENSMUSP00000058522.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000056949Re-query CCDS DB by Protein ID:ENSMUSP00000058522
Original member Current member NCBI NM_025721.2 NP_079997.1 Accepted alive Link to Nucleotide Sequence:NM_025721.2Link to Protein Sequence:NP_079997.1Re-query CCDS DB by Nucleotide ID:NM_025721Re-query CCDS DB by Protein ID:NP_079997Link to BLAST:NP_079997.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079997.1 399 Q9D5A0 399 100% 0 0

Chromosomal Locations for CCDS 23263.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 62272425 62273563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62282002 62282062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGAAGCTGGTGGTCCTAGTTGCGCTGTGGCTATGGCCTTCGTCACTGCTGGCGTATCCAACCATAACTG
TGTTGCCCGATGAAGAGCAGAATTTGAATCATTATGTACACATTTTACAGAACCTCATAATGAGTGTCCC
CACCAAGGAGCAGGATCTCGGGAAAAAGTTGAGTTCTTCAAGAACTGTGGATAGCGCAGAGCCAAGGTCA
TTGGCATCCAAGGTGCTACTCACCCCTGGGTTAGTCTCCGCTCAAGATGTCACCCCTGAGAGCGATGTTC
TGATCAGACCCGTCGATGAAACGACAAATTCCCGTACTAGAGGCTTCACGCTGAGGAGAAGAAGAACCCA
AAGTACAGCATTCTGGTCCATCCGGCCAAACAATATTTCTGTTGTTTTACGCACGGAGGAACCATTTATT
GAAAAAGAACCGGAACCAGAACTGGAGTCTAGTCGCCTGCCTACTGAGCCGGAGCCGGAGCTGGAACCGG
AGCCGGAGCCCGTGGCTGAATCCCGGCAAATGTCAGAGCCCGAAGAAGAGTTAGTGACCAGCACAACGCC
AAACAAGGAGCTAACGGGGACCTCACGGATATCATCCATGGCCACCCAGCCAGCTAACACCCAGGCAACT
CGTATTACTGTAACAGTAAAGACCACCAGCACCATGGATGTCTCCACAGACTCTGAGGATGTACCCCAGC
TCTCAGGCCAGTCGGAAATCCCGAGTGCTGAAGACTTACCTGGACGTCACTCACTGAATACGAGACATGA
GGATATTTTGAAAAAAATTTCCAATATTAATGCGGAGATTCAGCAGGGGCTTCTTGGTGGCAATAATAGT
CCCGAGTTCAAGGAGTTCATCAAGGCCTCCAGGGAGCACCTGAAACGGAGCCTGGCCCTGGCCGCAGCCG
CCGAGCACAAGTTGGAACAGATGTACGGATCTAACGTCTTCCCAGAGGGACGTACCAGCGACCCAGACAA
TGACATGGAAATGATTATCAATATGCTGTACAACTCCAGGTCCAAGTTGTCAGATTATTTCAATATTAAG
CGTGTACCATCAGAGCTGAGAGAAAAGGCTTCCGTCGTGAATGCTGAGTTGAGAAAAATATTATGTGTGG
ATCAGGTAGAAATGCAAAGCCTCATTAAGAAGCTGTTAAGCAATAATATGAAAATCCTAAATATTCTTAA
TGTCCCATGA

Translation (399 aa):
MKLVVLVALWLWPSSLLAYPTITVLPDEEQNLNHYVHILQNLIMSVPTKEQDLGKKLSSSRTVDSAEPRS
LASKVLLTPGLVSAQDVTPESDVLIRPVDETTNSRTRGFTLRRRRTQSTAFWSIRPNNISVVLRTEEPFI
EKEPEPELESSRLPTEPEPELEPEPEPVAESRQMSEPEEELVTSTTPNKELTGTSRISSMATQPANTQAT
RITVTVKTTSTMDVSTDSEDVPQLSGQSEIPSAEDLPGRHSLNTRHEDILKKISNINAEIQQGLLGGNNS
PEFKEFIKASREHLKRSLALAAAAEHKLEQMYGSNVFPEGRTSDPDNDMEMIINMLYNSRSKLSDYFNIK
RVPSELREKASVVNAELRKILCVDQVEMQSLIKKLLSNNMKILNILNVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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