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Report for CCDS39236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39236.1 Public Mus musculus 5 Hrk 23 108 98 CCDS HistoryNCBI Gene:12123Re-query CCDS DB by CCDS ID:39236.1Re-query CCDS DB by GeneID:12123See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 39236.1
This CCDS ID represents the protein described in PMID: 9555074 and 15084651. This transcript is supported by D83698.1. It should be noted this transcript is predicted to undergo nonsense-mediated mRNA decay (NMD). However, the protein is represented because it was detected endogenously PMID: 9555074. It is likely that the majority of transcripts representing this variant will undergo NMD, while some low level of NMD escape may allow for the expression of this protein.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 39236.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054836.6 ENSMUSP00000057532.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054836.6Link to Ensembl Protein Viewer:ENSMUSP00000057532.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000054836Re-query CCDS DB by Protein ID:ENSMUSP00000057532
Original member Current member NCBI NM_007545.2 NP_031571.1 Accepted alive Link to Nucleotide Sequence:NM_007545.2Link to Protein Sequence:NP_031571.1Re-query CCDS DB by Nucleotide ID:NM_007545Re-query CCDS DB by Protein ID:NP_031571Link to BLAST:NP_031571.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031571.1 92 P62816 92 100% 0 0

Chromosomal Locations for CCDS 39236.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 118169783 118170061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (279 nt):
ATGTGCCCGTGTCCCCGGCATCGCGGCCGCGGGCCCCCGGCCGTGTGCGGTTGCGGCGACGCTCGCCCCG
GGCTGCGCTGGGCGGCGGCGCAGGTGACCGCGCTGCGGCTGCAGGCGCTGGGCGACGAGCTGCACCGACG
CGCCATGCGGCGTCGCGCGCGGCCCCGGGACCCGCTGCCCGCGCTGCTGCCCGCGCTCCGCGCCCGCTGG
CCCTGGCTGTGCGCGGCCGCGCAGGTGGCGGCGCTGGCGGCCTGGCTGCTCGGCAGGCGGAGCGCGTAG

Translation (92 aa):
MCPCPRHRGRGPPAVCGCGDARPGLRWAAAQVTALRLQALGDELHRRAMRRRARPRDPLPALLPALRARW
PWLCAAAQVAALAAWLLGRRSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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