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Report for CCDS80920.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80920.1 Public Mus musculus 8 Car7 23 108 98 CCDS HistoryNCBI Gene:12354Re-query CCDS DB by CCDS ID:80920.1Re-query CCDS DB by GeneID:12354See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80920.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159416.7 ENSMUSP00000125112.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159416.7Link to Ensembl Protein Viewer:ENSMUSP00000125112.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159416Re-query CCDS DB by Protein ID:ENSMUSP00000125112
Original member Current member EBI ENSMUST00000162761.1 ENSMUSP00000125404.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162761.1Link to Ensembl Protein Viewer:ENSMUSP00000125404.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162761Re-query CCDS DB by Protein ID:ENSMUSP00000125404
Original member Current member NCBI NM_001301164.1 NP_001288093.1 Accepted alive Link to Nucleotide Sequence:NM_001301164.1Link to Protein Sequence:NP_001288093.1Re-query CCDS DB by Nucleotide ID:NM_001301164Re-query CCDS DB by Protein ID:NP_001288093Link to BLAST:NP_001288093.1
Original member Current member NCBI NM_001301165.1 NP_001288094.1 Accepted alive Link to Nucleotide Sequence:NM_001301165.1Link to Protein Sequence:NP_001288094.1Re-query CCDS DB by Nucleotide ID:NM_001301165Re-query CCDS DB by Protein ID:NP_001288094Link to BLAST:NP_001288094.1

Chromosomal Locations for CCDS 80920.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 104543538 104543607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104547687 104547805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104548186 104548281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104548385 104548447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104548937 104549092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104549557 104549679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGTCCCTCAGCATCACCAACAATGGCCACTCTGTCCAGGTGGACTTCAATGACAGTGATGACAGAACCG
TGGTGTCTGGGGGCCCCCTGGAAGGGCCCTATCGTCTCAAGCAGCTCCACTTCCACTGGGGCAAGAAGCG
CGACATGGGCTCAGAGCACACAGTGGACGGCAAGTCCTTCCCCAGCGAGCTACATCTGGTTCACTGGAAC
GCCAAGAAGTACAGCACTTTTGGGGAGGCGGCTGCAGCCCCTGATGGCCTGGCTGTGGTTGGTGTCTTCC
TGGAGACAGGAGATGAGCACCCAAGCATGAACCGCCTGACAGACGCCCTCTACATGGTTCGATTTAAGGA
CACCAAGGCCCAGTTCAGCTGCTTCAACCCCAAGTGCCTGCTGCCCACCAGCCGACACTACTGGACCTAT
CCTGGCTCCCTGACCACACCCCCACTCAGTGAGAGTGTCACTTGGATTGTGCTTCGGGAGCCCATCAGGA
TCTCCGAGAGGCAGATGGAGAAATTCCGGAGCCTGCTTTTCACCTCAGAGGATGATGAGAGGATCCATAT
GGTGGACAACTTCCGGCCACCACAGCCGCTGAAGGGCCGAGTGGTCAAAGCATCCTTCCAGGCCTGA

Translation (208 aa):
MSLSITNNGHSVQVDFNDSDDRTVVSGGPLEGPYRLKQLHFHWGKKRDMGSEHTVDGKSFPSELHLVHWN
AKKYSTFGEAAAAPDGLAVVGVFLETGDEHPSMNRLTDALYMVRFKDTKAQFSCFNPKCLLPTSRHYWTY
PGSLTTPPLSESVTWIVLREPIRISERQMEKFRSLLFTSEDDERIHMVDNFRPPQPLKGRVVKASFQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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