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Report for CCDS22642.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22642.1 Public Mus musculus 8 Sntb2 23 108 98 CCDS HistoryNCBI Gene:20650Re-query CCDS DB by CCDS ID:22642.1Re-query CCDS DB by GeneID:20650See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22642.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000212524.1 ENSMUSP00000148684.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212524.1Link to Ensembl Protein Viewer:ENSMUSP00000148684.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212524Re-query CCDS DB by Protein ID:ENSMUSP00000148684
Original member Current member NCBI NM_009229.5 NP_033255.1 Accepted alive Link to Nucleotide Sequence:NM_009229.5Link to Protein Sequence:NP_033255.1Re-query CCDS DB by Nucleotide ID:NM_009229Re-query CCDS DB by Protein ID:NP_033255Link to BLAST:NP_033255.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033255.1 520 Q61235 520 100% 0 0

Chromosomal Locations for CCDS 22642.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 106935802 106936321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106981126 106981339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106991396 106991606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106997066 106997208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107001510 107001706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107009781 107009965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107011292 107011384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGGCGGTGTGGACGCGGGCCACCAAAGCGGGGCTGGTGGAGCTGCTTCTAAGGGAGCGCTGGGTGCGGG
TGGTGGCCGAGCTCAGTGGCGAGAGCCTGAGCCTGACGGGCGACGCCGCCGCAGTCGAGCCTGAGCCGCC
GGCGGCCGCCTTCAACGGTCTTCCGAACGGCGGCGGCGGCGAGTCTCTGCCCGGGAGCCCGAACCGTGGC
CTGGGGCCGCCCAGCCCTCCCGCGCCGCCCCGCGGTCCCGCGGGGGAAGCGAGCGCCTCGCCGCCCGTGC
GCCGAGTGCGAGTGGTGAAGCAAGAGGCGGGCGGCCTGGGCATCAGCATCAAGGGCGGCCGCGAGAACCG
GATGCCGATCCTCATCTCCAAGATCTTCCCGGGGCTGGCGGCCGACCAGAGCCGGGCGCTGCGGCTGGGC
GACGCCATCCTGTCGGTGAACGGCACCGACCTGCGCCAGGCCACCCACGACCAGGCCGTGCAGGCGCTGA
AGCGCGCGGGCAAGGAGGTGCTGCTGGAGGTCAAATTCATCCGAGAAGTAACACCATATATCAAGAAACC
ATCTTTAGTATCAGATCTGCCATGGGAAGGTGCCTCTCCCCAGTCTCCAAGCTTTAGTGGCAGTGAAGAC
TCTGGCTCTCCAAAGCATCAGAACACCACCAAGGACAGGAAGGTCATCCCTCTCAAAATGTGCTTTGCTG
CTCGAAACCTGAGCATGCCAGATCTGGAGAACAGATTGATAGAGCTACATTCTCCTGATAGCAGGAACAC
CTTGATCTTACGCTGCAAGGATACGGCCACAGCACACTCCTGGTTCGTAGCTATCCACACCAACATAATG
GCTCTCCTCCCACAGGTACTGGCTGAGCTCAATGCCATGCTTGGTGCAACCAGTACAGCGGGAGGCAGCA
AGGAAGTCAAGCATATTGCCTGGCTGGCAGAGCAGGCAAAGCTGGATGGTGGACGACAGCAGTGGAGGCC
TGTTCTCATGGCTGTGACTGAGAAGGACTTGCTACTTTATGACTGCATGCCTTGGACAAGAGATGCCTGG
GCATCACCGTGTCATAGCTACCCTCTTGTTGCCACAAGGTTGGTTCATTCAGGTTCTGGATGTCGGTCAC
CCTCCCTTGGATCTGACCTGACCTTTGCTACCAGGACAGGCTCTCGGCAGGGCATTGAGATGCATCTCTT
CAGGGTTGAAACTCATCGGGATTTGTCGACCTGGACCAGAATACTTGTTCAGGGCTGCCATGCTGCTGCT
GAGCTGATCAAGGAAGTCTCCCTAGGCTGCACCTTAAGTGGCCAAGAGGTAAGGTTCACTGTCCACTATG
AACACGGGTTCACTATCACCAGAGACAATGGAGGCGCCAGCAGCATATTGTACCGCTATCCCTTTGAACG
GCTGAAGATGTCTGCTGATGATGGAATCAGAAATCTCTATTTGGATTTTGGTGGCCCTGAGGGAGAACTG
ACTATGGACCTGCATTCTTGTCCAAAGCCGATTGTATTTGTATTGCACACGTTCTTATCCGCCAAAGTCA
CTCGCATGGGACTGCTTGTGTGA

Translation (520 aa):
MAVWTRATKAGLVELLLRERWVRVVAELSGESLSLTGDAAAVEPEPPAAAFNGLPNGGGGESLPGSPNRG
LGPPSPPAPPRGPAGEASASPPVRRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLG
DAILSVNGTDLRQATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDLPWEGASPQSPSFSGSED
SGSPKHQNTTKDRKVIPLKMCFAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWFVAIHTNIM
ALLPQVLAELNAMLGATSTAGGSKEVKHIAWLAEQAKLDGGRQQWRPVLMAVTEKDLLLYDCMPWTRDAW
ASPCHSYPLVATRLVHSGSGCRSPSLGSDLTFATRTGSRQGIEMHLFRVETHRDLSTWTRILVQGCHAAA
ELIKEVSLGCTLSGQEVRFTVHYEHGFTITRDNGGASSILYRYPFERLKMSADDGIRNLYLDFGGPEGEL
TMDLHSCPKPIVFVLHTFLSAKVTRMGLLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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