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Report for CCDS23450.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23450.1 Public Mus musculus 9 Srprb 23 108 98 CCDS HistoryNCBI Gene:20818Re-query CCDS DB by CCDS ID:23450.1Re-query CCDS DB by GeneID:20818See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23450.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035157.9 ENSMUSP00000035157.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035157.9Link to Ensembl Protein Viewer:ENSMUSP00000035157.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000035157Re-query CCDS DB by Protein ID:ENSMUSP00000035157
Original member Current member NCBI NM_009275.4 NP_033301.1 Accepted alive Link to Nucleotide Sequence:NM_009275.4Link to Protein Sequence:NP_033301.1Re-query CCDS DB by Nucleotide ID:NM_009275Re-query CCDS DB by Protein ID:NP_033301Link to BLAST:NP_033301.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033301.1 269 P47758 269 100% 0 0

Chromosomal Locations for CCDS 23450.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 103190208 103190421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103191069 103191123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103192213 103192349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103197538 103197620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103198789 103198866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103201287 103201381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103201912 103202059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGGCTTCGGCGAACACCCGGCGAGTTGGCGATGGCGCCGGTGGCGCCTTCCAGCCTTACCTCGACTCCT
TACGACAGGAGCTGCAGCAGAGGGATCCGACGCTGCTCTCCGTGGCGGTGGCTCTCCTGGCGGTGCTGCT
GACGCTGGTGTTCTGGAAGTTCATCTGGAGCCGAAAGAGCAGTCAGAGAGCTGTTCTCTTCGTTGGTCTC
TGTGACTCTGGGAAAACGTTGCTGTTTGTCAGGTTGCTAACTGGCCAGTACAGAGACACACAGACTTCCA
TTACCGATAGTTCTGCCATATACAAAGTCAACAATAACAGGGGTAACAGCCTGACTCTGATCGACCTCCC
CGGGCATGAGAGCTTGAGGTTTCAGCTCTTAGATCGCTTTAAGTCTTCAGCTAGGGCTGTGGTGTTTGTG
GTGGACAGTGCGGCGTTCCAGCGGGAGGTGAAAGATGTGGCCGAATTTCTGTACCAGGTCCTCATCGACA
GCATGGCTCTGAAGAACTCACCGTCCTTATTAATAGCCTGCAATAAGCAAGATATCGCAATGGCAAAATC
AGCGAAGTTGATCCAGCAGCAGCTTGAGAAGGAGCTCAACACCTTACGAGTCACCCGGTCCGCGGCTCCC
AGCACACTGGACAGTTCCAGCACCGCACCTGCTCAGTTGGGGAAGAAAGGCAAAGAATTTGAATTTTCCC
AGTTGCCACTCAAAGTGGAGTTCCTGGAGTGTAGTGCCAAGGGTGGACGAGGGGACACTGGCTCTGCTGA
CATCCAGGACTTGGAGAAGTGGCTGGCCAAGATTGCCTGA

Translation (269 aa):
MASANTRRVGDGAGGAFQPYLDSLRQELQQRDPTLLSVAVALLAVLLTLVFWKFIWSRKSSQRAVLFVGL
CDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFV
VDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAP
STLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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