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Report for CCDS89072.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89072.1 Public Mus musculus 17 Tapbp 23 108 98 CCDS HistoryNCBI Gene:21356Re-query CCDS DB by CCDS ID:89072.1Re-query CCDS DB by GeneID:21356See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89072.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000234247.1 ENSMUSP00000157315.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234247.1Link to Ensembl Protein Viewer:ENSMUSP00000157315.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234247Re-query CCDS DB by Protein ID:ENSMUSP00000157315
Original member Current member NCBI NM_009318.2 NP_033344.1 Accepted alive Link to Nucleotide Sequence:NM_009318.2Link to Protein Sequence:NP_033344.1Re-query CCDS DB by Nucleotide ID:NM_009318Re-query CCDS DB by Protein ID:NP_033344Link to BLAST:NP_033344.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033344.1 465 Q9R233-1 465 100% 0 0

Chromosomal Locations for CCDS 89072.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 33919688 33919724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33919871 33920050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33920249 33920509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33925410 33925808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33926008 33926349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33926428 33926517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33926630 33926706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33928140 33928151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGAAGCCTCTGCTCCTGCTCGTCGCTGTGGCACTGGGCCTAGCGACCGTCGTCTCCGTCGTCTCGGCTG
GACCAGAGGCGATCGAGTGCTGGTTCGTGGAGGATGCAGGTGGGGGTGGCCTGTCTAAGAAACCTGCCAC
ACTGCTACTGCGCCATGGACCCAGGGGACCGCCGCCCCGGCCAGATCTTGACCCAAAGCTATACTTCAAG
GTGGATGACCCGGCGGGAATGCTCCTGGCCGCCTTCAGGCGGTACCCCGCAGGCGCCTCCGCCCCACACT
GCGAGATGAGCCGCTTCATCCCGTTCCCTGCCTCGGCGAAGTGGGCTAGAAGTCTGAGTCCGGAGCAGAA
CTGCCCGCGGGCCCTGGACGGGGATTGGCTGCTGGTCAGCGTATCCAGCACTCTCTTCAGCCTCTCCAGC
CTGCTGCGACCACAGCCGGAGCCTCTGCGGGAGCCTGTCGTCATCACCATGGCAACAGTGGTGCTGACCG
TCCTCACCCATAACCCTGCCCCTCGAGTCCAGCTGGGAAAGGATGCAGTGCTGGACCTGCGCTTCGCCTA
CGCACCCTCCGCCCTGGAAGGTTCTCCCTCTCTGGACGCAGGCCCTCCTCCCTTTGGGCTGGAGTGGCGA
CGCCAGCACAGGGGAAAGGGTCACCTGCTGTTGGCTGCCACCCCCGGGCTGGCCGGGAGAATGCCACCAG
CCCAGGAAAAGGCTACGGCATTTGCAGCTTGGGATGACGATGAGCCCTGGGGCCCGTGGACTGGGAATGG
GACCTTCTGGCTTCCAGCCGTGAAGCCTTCTCAGGAGGGTGTCTACCTGGCTACGGTACACCTGCCCTAC
CTGCAAGGACAGGTCTCCCTGGAGCTGACTGTGCACAAGGCCCCCAGAGTGTCTCTAACACCAGCACCCG
TTGTGTGGGCTGCCCCAGGAGAGGCACCCCCAGAACTGCTCTGTCTTGCATCCCACTTCTTCCCTGCGGA
GGGTCTGGAGGTCAAGTGGGAGCTCAGAGGCGGCCCAGGAGGAAGTTCTAGAAAGGTTGAGGGGAAGACG
TGGCTCTCCACCATCCGCCACCATTCCGATGGCTCTGTCAGCCAGTCTGGGCACCTGCAGCTACCTCCAG
TCACTGCCAAGCAGCATGGAGTTCACTATGTCTGTCGGGTGTACCACTCTAGCCTGCCAGCATCGGGGCG
CAGTGCTGACGTCACCCTGGAGGTGGCAGGCTTCTCAGGGCCCTCCATCGAGGACGGCATCGGCCTGTTC
CTGTCTGCTTTTCTCCTCCTCGGACTCCTCAAGGTGCTAGGCTGGCTGGCTGCCTACTGGACCATTCCTG
AAGTCTCAAAGGAGAAGGCCACAGCTGCCAGCCTGACCATTCCCAGGAACTCAAAGAAGTCACAGTAA

Translation (465 aa):
MKPLLLLVAVALGLATVVSVVSAGPEAIECWFVEDAGGGGLSKKPATLLLRHGPRGPPPRPDLDPKLYFK
VDDPAGMLLAAFRRYPAGASAPHCEMSRFIPFPASAKWARSLSPEQNCPRALDGDWLLVSVSSTLFSLSS
LLRPQPEPLREPVVITMATVVLTVLTHNPAPRVQLGKDAVLDLRFAYAPSALEGSPSLDAGPPPFGLEWR
RQHRGKGHLLLAATPGLAGRMPPAQEKATAFAAWDDDEPWGPWTGNGTFWLPAVKPSQEGVYLATVHLPY
LQGQVSLELTVHKAPRVSLTPAPVVWAAPGEAPPELLCLASHFFPAEGLEVKWELRGGPGGSSRKVEGKT
WLSTIRHHSDGSVSQSGHLQLPPVTAKQHGVHYVCRVYHSSLPASGRSADVTLEVAGFSGPSIEDGIGLF
LSAFLLLGLLKVLGWLAAYWTIPEVSKEKATAASLTIPRNSKKSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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