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Report for CCDS29761.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29761.1 Public Mus musculus 19 Ifit2 23 108 98 CCDS HistoryNCBI Gene:15958Re-query CCDS DB by CCDS ID:29761.1Re-query CCDS DB by GeneID:15958See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29761.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102826.3 ENSMUSP00000099890.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102826.3Link to Ensembl Protein Viewer:ENSMUSP00000099890.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102826Re-query CCDS DB by Protein ID:ENSMUSP00000099890
Original member Current member NCBI NM_001355262.1 NP_001342191.1 Accepted alive Link to Nucleotide Sequence:NM_001355262.1Link to Protein Sequence:NP_001342191.1Re-query CCDS DB by Nucleotide ID:NM_001355262Re-query CCDS DB by Protein ID:NP_001342191Link to BLAST:NP_001342191.1
Original member Current member NCBI NM_008332.3 NP_032358.1 Accepted alive Link to Nucleotide Sequence:NM_008332.3Link to Protein Sequence:NP_032358.1Re-query CCDS DB by Nucleotide ID:NM_008332Re-query CCDS DB by Protein ID:NP_032358Link to BLAST:NP_032358.1

Chromosomal Locations for CCDS 29761.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 34570366 34570370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34573067 34574474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGAGTACAACGAGTAAGGAGTCACTGGAGAGCAATCTGCGACAGCTAAAATGCCATTTCACCTGGAACC
TGATAGCAGAAGATGAGTCCTTGGATGAGTTTGAGGACAGGGTGTTTAACAAGGATGAGTTTCAGAACAG
TGAGTTTAAAGCCACCATGTGCAACATACTGGCCTATGTAAAGCACTGCAGAGGTCTAAATGAGGCAGCA
CTGCAATGCTTAGGGGAAGCTGAGGGCTTCATCCAGCAACAGCATCCTGACCAAGTAGAAATCAGAAGTC
TGGTCACCTGGGGAAACTATGCTTGGGTCTACTATCACATGGGCCAGTTCTCAAAGGCTCAGGCTTATCT
GGATAAAGTGAAACAGGTCTGCAAGAAGTTTTCCAGCCCCTACAGGATTGAGAATCCTGCTCTTGACTGT
GAGGAGGGGTGGGCCCGATTAAAGTGTACCAAGAACCAAAACGAGAGAGTGAAGGTGTGTTTCCAGAAGG
CTCTGGAAAAGGACCCGAAGAACCCAGAATTCACCTCTGGATGGGCCATTGCGAACTACCGTCTGGATGA
CTGGCCAGCAAGGAATTACTGCATTGACTCTCTGGAGCAAGCCATTCAACTGTCTCCTGACAACACTTAT
GTTAAAGTCCTCTTGGCACTGAAGCTTGACGCGGTACATAAAAACCAAGCAATGGCGCTGGTTGAAGAAG
CCTTAAAGAAAGACCCAAGTGCAATAGATACACTCCTCAGGGCAGCCAGGTTTTATTGCAAGGTATATGA
CACAGACAGAGCTATACAGTTGCTTAGAAAGGCTTTGGAAAAGCTGCCAAACAACGCCTATGTGCATTAC
TATATGGGGTGCTGTTATAGGTCAAAAGTCCATCATATGTTGAACAGAAGGGAAATGGTATTTAGTGGGG
ATAGGAAGAAGTTAGAGGAACTAATACAACTGGCAGTGAATCACTTACGGAAAGCAGAGGAAATCAAGGA
GATGCTTGAATATTCCTGTAGCTTCCTTGCTGATCTTTATATCATAGCAAAAAAGTATGACGAAGCCGAT
TACTACTTCCAGAAAGAATTGAGCAAGGACCTCCCTCCTGGCCCTAAACAGTTACTCCACCTTCGGTATG
GCAACTTTCAGTTTTTTCAAATGAAGCGTCAAGACAAGGCTATCTACCATTATATGGAGGGTGTGAAAAT
AAAGAAGAAAACAATCCCCCAAAAAAAGATGAGAGAGAAACTTCAAAGAATTGCCCTAAGGCGGCTTCAT
GAAGATGAGTCTGATTCTGAGGCCTTGCATATCTTGGCATTTCTTCAGGAGAATGGAGGAGGTCAGCAAG
CTGATAAAGACTCTGAGAGGGGAGTGGACTCTGCAAACCAGGTACCTTCAGCATCTTTGGATGAAGCAGG
TGCTGAATACTAG

Translation (470 aa):
MSTTSKESLESNLRQLKCHFTWNLIAEDESLDEFEDRVFNKDEFQNSEFKATMCNILAYVKHCRGLNEAA
LQCLGEAEGFIQQQHPDQVEIRSLVTWGNYAWVYYHMGQFSKAQAYLDKVKQVCKKFSSPYRIENPALDC
EEGWARLKCTKNQNERVKVCFQKALEKDPKNPEFTSGWAIANYRLDDWPARNYCIDSLEQAIQLSPDNTY
VKVLLALKLDAVHKNQAMALVEEALKKDPSAIDTLLRAARFYCKVYDTDRAIQLLRKALEKLPNNAYVHY
YMGCCYRSKVHHMLNRREMVFSGDRKKLEELIQLAVNHLRKAEEIKEMLEYSCSFLADLYIIAKKYDEAD
YYFQKELSKDLPPGPKQLLHLRYGNFQFFQMKRQDKAIYHYMEGVKIKKKTIPQKKMREKLQRIALRRLH
EDESDSEALHILAFLQENGGGQQADKDSERGVDSANQVPSASLDEAGAEY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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