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Report for CCDS19994.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19994.1 Public Mus musculus 6 Bpgm 23 108 98 CCDS HistoryNCBI Gene:12183Re-query CCDS DB by CCDS ID:19994.1Re-query CCDS DB by GeneID:12183See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19994.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045372.5 ENSMUSP00000047393.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045372.5Link to Ensembl Protein Viewer:ENSMUSP00000047393.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000045372Re-query CCDS DB by Protein ID:ENSMUSP00000047393
Original member Current member NCBI NM_007563.5 NP_031589.1 Accepted alive Link to Nucleotide Sequence:NM_007563.5Link to Protein Sequence:NP_031589.1Re-query CCDS DB by Nucleotide ID:NM_007563Re-query CCDS DB by Protein ID:NP_031589Link to BLAST:NP_031589.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031589.1 259 P15327 259 100% 0 0

Chromosomal Locations for CCDS 19994.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 34487350 34487950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34504271 34504449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGTCCAAGCACAAACTTATTATACTAAGACATGGAGAGGGCCAATGGAATAAGGAGAACCGATTCTGTA
GTTGGGTGGACCAGAAACTTAACAACGACGGACTGGAGGAGGCTCGGAACTGTGGGAGGCAGCTCAAAGC
TCTCAACTTCGAGTTTGATCTTGTCTTCACATCCATCCTTAACAGGTCCATTCACACAGCCTGGCTGATC
CTGGAAGAGCTGGGGCAGGAGTGGGTGCCTGTGGAGAGCTCCTGGCGTCTGAATGAGCGTCACTATGGAG
CCTTGATTGGCCTCAACAGGGAGAAAATGGCTTTGAATCATGGTGAAGAGCAGGTAAGGCTCTGGAGGAG
AAGCTACAACGTGACCCCACCTCCTATAGAGGAGTCTCATCCCTACTTCCACGAGATCTACAGTGACCGG
AGGTACAAAGTGTGCGATGTGCCCTTGGATCAACTGCCACGTTCAGAAAGCTTGAAGGATGTTCTGGAGA
GACTTCTTCCCTACTGGAAGGAAAGGATTGCTCCGGAAATCTTAAAGGGCAAAAGCATTCTGATATCTGC
TCACGGGAATAGCAGTAGAGCTCTCCTGAAACATCTGGAAGGTATCTCAGACGAGGATATTATCAACATC
ACTCTGCCCACTGGAGTTCCGATTCTGCTGGAGTTGGATGAGAACCTGCGTGCCGTTGGGCCTCACCAGT
TCCTGGGCAACCAGGAGGCCATCCAGGCAGCCATTAAGAAAGTGGATGATCAAGGGAAAGTGAAACAAGG
CAAACAATAA

Translation (259 aa):
MSKHKLIILRHGEGQWNKENRFCSWVDQKLNNDGLEEARNCGRQLKALNFEFDLVFTSILNRSIHTAWLI
LEELGQEWVPVESSWRLNERHYGALIGLNREKMALNHGEEQVRLWRRSYNVTPPPIEESHPYFHEIYSDR
RYKVCDVPLDQLPRSESLKDVLERLLPYWKERIAPEILKGKSILISAHGNSSRALLKHLEGISDEDIINI
TLPTGVPILLELDENLRAVGPHQFLGNQEAIQAAIKKVDDQGKVKQGKQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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