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Report for CCDS20217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20217.1 Public Mus musculus 6 Gadd45a 23 108 98 CCDS HistoryNCBI Gene:13197Re-query CCDS DB by CCDS ID:20217.1Re-query CCDS DB by GeneID:13197See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20217.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043098.8 ENSMUSP00000044034.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043098.8Link to Ensembl Protein Viewer:ENSMUSP00000044034.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000043098Re-query CCDS DB by Protein ID:ENSMUSP00000044034
Original member Current member NCBI NM_007836.1 NP_031862.1 Accepted alive Link to Nucleotide Sequence:NM_007836.1Link to Protein Sequence:NP_031862.1Re-query CCDS DB by Nucleotide ID:NM_007836Re-query CCDS DB by Protein ID:NP_031862Link to BLAST:NP_031862.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031862.1 165 P48316 165 100% 0 0

Chromosomal Locations for CCDS 20217.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 67035659 67035772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67036678 67036915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67037010 67037111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67037201 67037244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGACTTTGGAGGAATTCTCGGCTGCAGAGCAGAAGACCGAAAGGATGGACACGGTGGGCGATGCCCTGG
AGGAAGTGCTCAGCAAGGCTCGGAGTCAGCGCACCATTACGGTCGGCGTGTACGAGGCTGCCAAGCTGCT
CAACGTAGACCCCGATAACGTGGTACTGTGCCTGCTGGCTGCTGACGAAGACGACGACCGGGATGTGGCT
CTGCAGATCCATTTCACCCTCATCCGTGCGTTCTGCTGCGAGAACGACATCAACATCCTGCGGGTCAGCA
ACCCGGGTCGGCTAGCTGAGCTGCTGCTACTGGAGAACGACGCGGGCCCGGCGGAGAGCGGGGGCGCCGC
GCAGACCCCGGACCTGCACTGTGTGCTGGTGACGAACCCACATTCATCACAATGGAAGGATCCTGCCTTA
AGTCAACTTATTTGTTTTTGCCGGGAAAGTCGCTACATGGATCAGTGGGTGCCCGTGATTAATCTCCCGG
AACGGTGA

Translation (165 aa):
MTLEEFSAAEQKTERMDTVGDALEEVLSKARSQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVA
LQIHFTLIRAFCCENDINILRVSNPGRLAELLLLENDAGPAESGGAAQTPDLHCVLVTNPHSSQWKDPAL
SQLICFCRESRYMDQWVPVINLPER


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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