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Report for CCDS57121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57121.1 Public Mus musculus 18 Diaph1 23 108 98 CCDS HistoryNCBI Gene:13367Re-query CCDS DB by CCDS ID:57121.1Re-query CCDS DB by GeneID:13367See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57121.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115634.7 ENSMUSP00000111297.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115634.7Link to Ensembl Protein Viewer:ENSMUSP00000111297.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115634Re-query CCDS DB by Protein ID:ENSMUSP00000111297
Original member Current member NCBI NM_007858.4 NP_031884.1 Accepted alive Link to Nucleotide Sequence:NM_007858.4Link to Protein Sequence:NP_031884.1Re-query CCDS DB by Nucleotide ID:NM_007858Re-query CCDS DB by Protein ID:NP_031884Link to BLAST:NP_031884.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031884.1 1255 O08808 1255 100% 0 0

Chromosomal Locations for CCDS 57121.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37845341 37845498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37851551 37851637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37853303 37853438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37853544 37853708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37854480 37854604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37855474 37855603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37855713 37855952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37856174 37856275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37856453 37856547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37860415 37860513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37889215 37889223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37889698 37889812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37890477 37891169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37891793 37891972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37893350 37893414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37894094 37894209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37895182 37895298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37896095 37896213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37896361 37896471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37897494 37897602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37900645 37900784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37902085 37902148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37903064 37903150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37903327 37903457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37903756 37903857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37905004 37905159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37935202 37935318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3768 nt):
ATGGAGCCGTCCGGCGGGGGCCTGGGGCCCGGCCGCGGTACCCGGGACAAGAAGAAGGGTCGGAGCCCGG
ATGAGCTGCCTGCGACGGGCGGCGACGGCGGCAAACATAAGAAATTTCTGGAGAGATTTACCAGCATGAG
GATTAAGAAGGAGAAAGAAAAGCCCAATTCTGCTCATAGAAACTCCTCTGCATCGTACGGAGATGACCCC
ACTGCTCAGTCATTGCAGGACATCTCAGACGAGCAAGTTCTTGTCCTCTTTGAGCAGATGCTGGTGGATA
TGAACCTGAATGAGGAGAAGCAGCAGCCTTTGCGAGAGAAGGACATTGTCATCAAGAGGGAGATGGTGTC
GCAATATCTGCACACTTCCAAGGCTGGCATGAACCAGAAAGAGAGCTCTAGGTCTGCCATGATGTACATC
CAGGAGCTGAGGTCGGGCTTGCGGGATATGCACCTGCTTAGCTGCCTTGAGTCCCTTCGAGTCTCTCTCA
ACAATAACCCTGTCAGTTGGGTGCAGACATTTGGTGCTGAGGGCCTAGCCTCCTTATTGGACATCCTCAA
ACGACTCCATGATGAGAAAGAGGAGACTTCTGGAAACTACGACAGCCGAAACCAGCATGAGATTATCCGC
TGTTTGAAGGCTTTCATGAACAACAAGTTTGGAATCAAAACTATGTTGGAGACGGAAGAAGGAATCCTAC
TGCTGGTCAGAGCCATGGATCCTGCTGTTCCCAATATGATGATTGATGCAGCAAAGCTGCTGTCTGCCCT
CTGTATCCTGCCGCAGCCGGAGGACATGAATGAACGAGTTCTAGAGGCAATGACAGAGAGAGCTGAAATG
GATGAGGTCGAACGCTTCCAGCCACTTCTGGACGGATTAAAAAGTGGGACCTCTATTGCCCTCAAAGTGG
GATGCCTACAGCTCATCAATGCTCTCATCACTCCAGCTGAGGAACTGGACTTCCGAGTTCACATCCGAAG
TGAGCTGATGCGCCTGGGGCTGCATCAGGTGTTGCAGGAGCTTCGAGAGATTGAAAATGAAGATATGAAA
GTACAGCTGTGCGTGTTTGATGAACAAGGGGATGAAGATTTCTTTGATCTGAAGGGACGGCTGGATGATA
TCCGCATGGAGATGGATGACTTTGGTGAAGTTTTTCAGATTATTTTAAACACAGTGAAAGATTCAAAGGC
AGAGCCACACTTCCTGTCTATCTTGCAGCATCTCCTGTTGGTCCGAAATGATTATGAAGCCAGGCCACAG
TACTATAAACTGATTGAAGAATGTGTTTCTCAGATAGTTCTACACAAAAATGGAACTGATCCTGACTTCA
AGTGCCGACACCTGCAGATTGATATTGAGAGATTGGTTGATCAAATGATTGATAAAACAAAGGTGGAAAA
ATCTGAGGCCAAAGCTACAGAGCTGGAAAAAAAGTTGGATTCAGAATTAACAGCGCGGCACGAGTTACAA
GTAGAAATGAAAAAGATGGAAAATGACTTTGAGCAGAAACTTCAGGATCTTCAAGGAGAAAAGGATGCCT
TGGATTCTGAAAAGCAGCAGATCACTGCACAGAAACAAGACCTGGAGGCAGAGGTGTCCAAGCTGACAGG
AGAGGTTGCCAAGCTGTCAAAAGAACTAGAAGATGCCAAGAATGAAATGGCTTCTCTCTCTGCTGTGGTT
GTTGCACCTTCTGTTTCTAGCAGTGCTGCTGTTCCCCCTGCCCCTCCTCTGCCTGGTGACTCTGGCACTG
TTATTCCACCTCCCCCACCCCCACCTCCTCTTCCTGGAGGTGTGGTCCCACCATCCCCTCCTCTGCCTCC
AGGTACTTGTATCCCTCCACCTCCTCCTTTACCTGGAGGTGCTTGTATACCCCCTCCCCCCCAGTTGCCT
GGCAGTGCTGCCATCCCTCCACCTCCTCCTCTACCTGGAGTTGCTTCCATCCCCCCACCTCCCCCTTTGC
CTGGGGCTACTGCCATCCCCCCACCTCCCCCTTTGCCTGGGGCTACTGCCATCCCCCCACCTCCCCCTTT
GCCTGGAGGTACAGGTATACCACCACCACCTCCTCCTTTGCCTGGAAGTGTTGGCGTTCCCCCACCCCCT
CCCTTGCCTGGAGGACCAGGACTGCCTCCTCCCCCTCCCCCTTTTCCTGGAGCACCTGGCATTCCTCCAC
CTCCACCTGGTATGGGCGTGCCTCCACCTCCCCCCTTTGGATTTGGGGTTCCTGCGGCCCCAGTTCTGCC
ATTTGGATTAACCCCCAAAAAAGTTTATAAGCCAGAGGTGCAGCTCCGGAGGCCAAACTGGTCCAAGTTT
GTGGCTGAGGACCTTTCCCAGGACTGCTTCTGGACAAAGGTGAAGGAGGACCGCTTTGAGAACAATGAAC
TTTTTGCCAAACTTACCCTTGCCTTCTCCGCCCAGACCAAGACTTCTAAAGCCAAGAAGGATCAAGAAGG
TGGAGAAGAAAAGAAATCTGTTCAAAAGAAGAAAGTAAAAGAGCTGAAAGTGCTGGATTCAAAGACAGCG
CAGAATCTCTCAATCTTTTTGGGTTCATTCCGCATGCCCTATCAAGAGATAAAGAACGTTATCCTGGAGG
TGAATGAGGCTGTTCTCACAGAGTCTATGATCCAGAACCTCATTAAACAGATGCCAGAGCCAGAGCAGCT
AAAGATGCTCTCTGAACTGAAGGAGGAGTACGATGATCTGGCTGAGTCAGAGCAGTTTGGTGTGGTGATG
GGCACAGTGCCCCGCCTTCGGCCTCGCCTCAACGCCATCCTCTTCAAGCTACAGTTCAGTGAGCAAGTTG
AGAACATCAAGCCAGAGATCGTGTCTGTCACCGCCGCATGCGAAGAGCTGCGTAAGAGTGAGAACTTCTC
CAGCCTCCTGGAGCTCACACTGCTGGTCGGAAACTATATGAATGCGGGCTCCAGGAATGCTGGTGCTTTC
GGCTTCAATATCAGCTTCCTTTGTAAGCTTCGAGACACCAAGTCTGCAGATCAGAAGATGACTCTGTTGC
ATTTCTTGGCTGAGTTATGTGAGAATGACCACCCCGAAGTCCTCAAGTTTCCTGATGAGCTTGCCCATGT
AGAGAAAGCCAGCAGAGTCTCTGCTGAGAACCTGCAGAAGAGCTTAGATCAGATGAAGAAGCAGATTGCG
GACGTGGAGCGCGATGTTCAGAATTTCCCAGCTGCCACTGACGAGAAGGACAAGTTTGTTGAGAAGATGA
CCAGCTTTGTGAAGGATGCACAGGAACAGTATAACAAACTACGGATGATGCACTCCAACATGGAGACCCT
CTATAAGGAGCTAGGTGACTACTTCGTCTTTGACCCTAAGAAGTTGTCTGTAGAGGAATTCTTTATGGAT
CTGCACAACTTTAGGAATATGTTTTTGCAAGCAGTCAAGGAAAACCAGAAGCGCCGGGAAACAGAAGAAA
AGATGCGGAGAGCAAAATTAGCCAAGGAGAAGGCAGAAAAAGAGCGACTGGAGAAGCAGCAGAAGCGCGA
GCAGCTCATCGACATGAACGCAGAGGGGGATGAGACAGGTGTGATGGACAGTCTTCTAGAAGCTCTGCAG
TCAGGGGCAGCATTCCGACGGAAGAGAGGGCCCCGGCAGGTCAACAGGAAGGCTGGGTGTGCAGTCACAT
CTCTGCTAGCCTCGGAGCTGACCAAGGATGATGCCATGGCTCCTGGTCCTGTTAAGGTACCCAAGAAAAG
TGAAGGAGTCCCCACAATCCTGGAAGAAGCCAAGGAGCTGGTTGGCCGTGCAAGCTAA

Translation (1255 aa):
MEPSGGGLGPGRGTRDKKKGRSPDELPATGGDGGKHKKFLERFTSMRIKKEKEKPNSAHRNSSASYGDDP
TAQSLQDISDEQVLVLFEQMLVDMNLNEEKQQPLREKDIVIKREMVSQYLHTSKAGMNQKESSRSAMMYI
QELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIR
CLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM
DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK
VQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVRNDYEARPQ
YYKLIEECVSQIVLHKNGTDPDFKCRHLQIDIERLVDQMIDKTKVEKSEAKATELEKKLDSELTARHELQ
VEMKKMENDFEQKLQDLQGEKDALDSEKQQITAQKQDLEAEVSKLTGEVAKLSKELEDAKNEMASLSAVV
VAPSVSSSAAVPPAPPLPGDSGTVIPPPPPPPPLPGGVVPPSPPLPPGTCIPPPPPLPGGACIPPPPQLP
GSAAIPPPPPLPGVASIPPPPPLPGATAIPPPPPLPGATAIPPPPPLPGGTGIPPPPPPLPGSVGVPPPP
PLPGGPGLPPPPPPFPGAPGIPPPPPGMGVPPPPPFGFGVPAAPVLPFGLTPKKVYKPEVQLRRPNWSKF
VAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGEEKKSVQKKKVKELKVLDSKTA
QNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVVM
GTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAF
GFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIA
DVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMD
LHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGVMDSLLEALQ
SGAAFRRKRGPRQVNRKAGCAVTSLLASELTKDDAMAPGPVKVPKKSEGVPTILEEAKELVGRAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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