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Report for CCDS51776.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51776.1 Public Mus musculus 6 Tril 23 108 98 CCDS HistoryNCBI Gene:66873Re-query CCDS DB by CCDS ID:51776.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51776.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000127748.4 ENSMUSP00000116056.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000127748.4Link to Ensembl Protein Viewer:ENSMUSP00000116056.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000127748Re-query CCDS DB by Protein ID:ENSMUSP00000116056
Original member Current member NCBI NM_025817.4 NP_080093.1 Accepted alive Link to Nucleotide Sequence:NM_025817.4Link to Protein Sequence:NP_080093.1Re-query CCDS DB by Nucleotide ID:NM_025817Re-query CCDS DB by Protein ID:NP_080093Link to BLAST:NP_080093.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080093.1 809 Q9DBY4 809 100% 0 0

Chromosomal Locations for CCDS 51776.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 53817806 53820235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2430 nt):
ATGGAGGGTGTGGGTGCCGTGCGCTTCTGGCTCGTGGTGTGCGGCTGCCTGGCGTTCCCGCCGCGGGCCG
AGTCCGTGTGCCCGGAGCGCTGCGACTGCCAGCACCCCCAACATCTCCTATGCACCAACAGGGGACTTCG
CGCTGTACCCAAGACCAGCTCGCTGCCTAGTCCCCAGGACGTGCTCACCTACAGCCTAGGCGGCAACTTC
ATCACCAACATCACCGCCTTCGACTTCCACCGTCTGGGGCAGCTCAGACGGCTGGATCTGCAGTACAACC
AGATCCGTTCTCTCCACCCCAAGACCTTCGAGAAGCTCTCACGACTAGAGGAGCTGTACCTGGGGAACAA
CCTCTTGCAGGCGCTCGTTCCTGGCACGTTGGCTCCGCTGCGCAAGTTGCGCATCCTTTACGCCAACGGC
AACGAGATTGGACGCCTGAGTCGCGGGTCCTTCGAGGGCCTGGAGAGTTTGGTCAAGCTACGGCTGGACG
GGAACGTGCTGGGAGCGCTGCCGGACGCGGTCTTCGCTCCCCTGGGCAACCTGCTCTACCTACACCTGGA
ATCTAACCGGATCCGTTTTTTGGGCAAGAACGCCTTCAGCCAGCTGGGTAAGCTTCGATTCCTCAATCTC
TCGGCCAACGAGCTGCAACCCTCTCTGCGCCACGCGGCCACCTTTGTCCCTCTGCGCTCCCTCTCTACTC
TCATCCTCTCAGCCAACAGCCTACAGCACCTCGGCCCCCGCGTCTTCCAGCACCTGCCACGCCTAGGCCT
GCTCTCCCTCAGTGGAAACCAGCTCACGCACCTCGCCCCAGAGGCCTTTTGGGGACTGGAGGCCCTACGT
GAGCTGCGCCTGGAAGGTAACCGGCTGAACCAGCTCCCCCTGACACTGCTGGAGCCTCTGCACAGCTTGG
AGGCACTAGACCTGAGTGGCAATGAGCTTTCTGCTCTGCACCCTGCCACCTTTGGCCACCAGGGCCGGCT
CCGTGAGCTCAGCCTGCGCGACAACGCGCTCAGCGCCCTTTCTGGGGACATCTTTGCCGCCAGTCCGGCT
CTCTACCGGCTGGATCTAGACGGCAATGGTTGGACCTGCGACTGCCGGTTGCGGGGTCTGAAACGCTGGA
TGGGCAACTGGCATTCTCAGGGTCGCCTCCTTACGGTCTTCGTGCAGTGTCGCCACCCCCCGGCCCTGCG
GGGCAAGTACCTGGATTACCTGGATGACCAACTGCTGCAGAATGGGTCTTGCGTGGATCCCTCACCTTCC
CCTACAGCAGGCAGTAGGCAGTGGCCGCTACCCACATCGTCAGAAGAGGGGATGACGCCCCCTGCAGGCC
TCTCGCAGGAGCTACCACTGCAGCCGCAGCCGCAGCCCCAGCAGCGGGGAAGACTTCTACCAGGAGTGGC
CTGGGGTGGGGCTGCCAAGGAACTGGTGGGCAACCGCAGCGCATTAAGGTTGAGCCGGCGGGGACCAGGT
CCCCATCAGGGCCCCTCTGCTGCGGCTCCGGGCTCTGCCCCACAGTCCTTGGACCTGCACGAGAAGCCGG
GGAGAGGACGTCACACCCGAGCCAATCTCTCCCAGACGGAGCCCACCCCGACGTCTGAGCCCGCCTCTGG
GACACCATCTGCCAGAGACAGCTGGCAGCGCGCAGCAAAGCAGCGCCTAGCGTCCGAGCAGCAAGAGAGC
GCAGTCCAGTCCGTTAGTGGGGTTGGTTTGCCACCTCTGGTGTCTGACCCCTGTGACTTCAACAAATTCA
TTCTGTGCAACCTGACAGTAGAGGCGGTGAGCGCCAACAGCGCCTCGGTGCGCTGGGCGGTTCGCGAACA
CCGCAGTCCCCGGCCGCAGGGCGGCGCACGCTTCCGCCTGCTTTTCGACCGCTTTGGCCAGCAGCCCAAG
TTCCAGCGCTTCGTCTACCTGCCGGAGCGCAGCGACTCGGCCACGCTGCACGAGCTGCGCGGAGACACCC
CCTACCTAGTATGCGTGGAGGGTGTGCTCGGGGGTCGCGTTTGCCCCGTGGCCCCCCGAGACCACTGCGC
AGGGTTAGTAACCCTGCCAGAGGCAGGAGGTCGAGGTGGCGTCGACTACCAGCTCCTGACCTTGGTCTTG
CTGGCTGTCAACGCGCTTCTGGTGCTCCTGGCACTGGCAGCCTGGGGATCGCGATGGCTGCGGAGGAAGC
TGCGTGCCAGGCGGAAGGGAGGGGCCCCGGTCCACGTTCGCCACATGTACTCCACCCGACGGCCACTGCG
CTCCATGGGCACTGGTGTGTCCGCGGACTTCTCAGGCTTCCAGTCGCACCGTCCCCGCACCACCGTGTGC
GCGCTCAGCGAGGCCGACCTCATTGAGTTCCCCTGCGACCGCTTCATGGACAGCACCGGCGGTGGTACCA
GTGGCAGCTTGAGGCGGGAGGATCACCTCTTGCAAAGATTCGCTGACTAG

Translation (809 aa):
MEGVGAVRFWLVVCGCLAFPPRAESVCPERCDCQHPQHLLCTNRGLRAVPKTSSLPSPQDVLTYSLGGNF
ITNITAFDFHRLGQLRRLDLQYNQIRSLHPKTFEKLSRLEELYLGNNLLQALVPGTLAPLRKLRILYANG
NEIGRLSRGSFEGLESLVKLRLDGNVLGALPDAVFAPLGNLLYLHLESNRIRFLGKNAFSQLGKLRFLNL
SANELQPSLRHAATFVPLRSLSTLILSANSLQHLGPRVFQHLPRLGLLSLSGNQLTHLAPEAFWGLEALR
ELRLEGNRLNQLPLTLLEPLHSLEALDLSGNELSALHPATFGHQGRLRELSLRDNALSALSGDIFAASPA
LYRLDLDGNGWTCDCRLRGLKRWMGNWHSQGRLLTVFVQCRHPPALRGKYLDYLDDQLLQNGSCVDPSPS
PTAGSRQWPLPTSSEEGMTPPAGLSQELPLQPQPQPQQRGRLLPGVAWGGAAKELVGNRSALRLSRRGPG
PHQGPSAAAPGSAPQSLDLHEKPGRGRHTRANLSQTEPTPTSEPASGTPSARDSWQRAAKQRLASEQQES
AVQSVSGVGLPPLVSDPCDFNKFILCNLTVEAVSANSASVRWAVREHRSPRPQGGARFRLLFDRFGQQPK
FQRFVYLPERSDSATLHELRGDTPYLVCVEGVLGGRVCPVAPRDHCAGLVTLPEAGGRGGVDYQLLTLVL
LAVNALLVLLALAAWGSRWLRRKLRARRKGGAPVHVRHMYSTRRPLRSMGTGVSADFSGFQSHRPRTTVC
ALSEADLIEFPCDRFMDSTGGGTSGSLRREDHLLQRFAD


Links Key
 Links to:   History report
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  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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