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Report for CCDS26544.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26544.1 Public Mus musculus 13 Lman2 23 108 98 CCDS HistoryNCBI Gene:66890Re-query CCDS DB by CCDS ID:26544.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26544.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021940.7 ENSMUSP00000021940.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021940.7Link to Ensembl Protein Viewer:ENSMUSP00000021940.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021940Re-query CCDS DB by Protein ID:ENSMUSP00000021940
Original member Current member NCBI NM_025828.3 NP_080104.2 Accepted alive Link to Nucleotide Sequence:NM_025828.3Link to Protein Sequence:NP_080104.2Re-query CCDS DB by Nucleotide ID:NM_025828Re-query CCDS DB by Protein ID:NP_080104Link to BLAST:NP_080104.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080104.2 358 Q9DBH5 358 100% 0 0

Chromosomal Locations for CCDS 26544.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55346877 55347037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55348315 55348434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55351156 55351270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55351380 55351541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55351711 55351790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55352946 55353063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55362121 55362239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55362388 55362589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGGCGGCCGAGGCCTGGCTTTGGCGCTGGGGCTGGGGCTGGGGTCAGCGGTGCCCAGGGAGGCCTGGGC
TTCCTGGCCCCGGCCCGAGCCCCACGACATTTCTACATTTGCTTCTGTTGCTGGGGCCGGTGGCTGCGGA
TATCACCGACGGCAACAGCGAACACCTCAAGCGGGAGCACTCGCTCATCAAGCCCTACCAAGGGGTCGGT
TCCAGTTCCATGCCGCTCTGGGACTTCCAAGGCAGCACGATGCTGACGAGCCAGTACGTGCGCCTGACCC
CGGACGAGCGCAGCAAAGAGGGCTCGATCTGGAACCACCAGCCATGCTTCCTTAAGGACTGGGAAATGCA
CGTCCACTTCAAAGTCCATGGCACAGGGAAGAAGAACCTCCACGGAGATGGCATTGCCTTGTGGTACACC
CGAGACCGCCTCGTACCAGGGCCTGTGTTTGGAAGCAAAGACAACTTCCATGGTTTGGCCATCTTCCTGG
ACACGTATCCCAATGATGAAACCACTGAGCGTGTGTTCCCGTACATCTCGGTGATGGTGAACAATGGCTC
TCTGTCGTACGATCATAGCAAAGATGGACGATGGAGTGAGTTGGCAGGCTGCACGGCTGACTTCCGCAAC
CGGGACCATGACACCTTCCTAGCTGTACGCTATTCCCGGGGCCGCCTCACGGTGATGACTGACCTGGAAG
ACAAGAACGAGTGGAAGAACTGCATTGACATCACAGGGGTGCGCCTGCCCACTGGCTACTACTTTGGAGC
CTCTGCTGGCACCGGCGACCTGTCTGACAACCACGACATCATCTCCATCAAGCTGTTCCAGCTCACGGTG
GAGCGGACGCCTGAGGAGGAGAGCATCGACTGGACCAAGATTGAGCCTGGCGTCAATTTCCTCAAGTCCC
CCAAAGACAATGTGGACGACCCCACTGGAAACTTCCGCAATGGGCCCCTGACAGGATGGAGGGTGTTCCT
GCTGCTGCTGTGCGCACTCCTGGGCGTTGTCGTCTGTGCTGTGGTGGGCGCTGTGGTGTTTCAGAAGCGC
CAGGAACGGAACAAACGTTTCTACTGA

Translation (358 aa):
MAAEAWLWRWGWGWGQRCPGRPGLPGPGPSPTTFLHLLLLLGPVAADITDGNSEHLKREHSLIKPYQGVG
SSSMPLWDFQGSTMLTSQYVRLTPDERSKEGSIWNHQPCFLKDWEMHVHFKVHGTGKKNLHGDGIALWYT
RDRLVPGPVFGSKDNFHGLAIFLDTYPNDETTERVFPYISVMVNNGSLSYDHSKDGRWSELAGCTADFRN
RDHDTFLAVRYSRGRLTVMTDLEDKNEWKNCIDITGVRLPTGYYFGASAGTGDLSDNHDIISIKLFQLTV
ERTPEEESIDWTKIEPGVNFLKSPKDNVDDPTGNFRNGPLTGWRVFLLLLCALLGVVVCAVVGAVVFQKR
QERNKRFY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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