NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28901.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28901.1 Public Mus musculus 17 Plin3 23 108 98 CCDS HistoryNCBI Gene:66905Re-query CCDS DB by CCDS ID:28901.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28901.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019726.7 ENSMUSP00000019726.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019726.7Link to Ensembl Protein Viewer:ENSMUSP00000019726.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000019726Re-query CCDS DB by Protein ID:ENSMUSP00000019726
Original member Current member NCBI NM_025836.3 NP_080112.1 Accepted alive Link to Nucleotide Sequence:NM_025836.3Link to Protein Sequence:NP_080112.1Re-query CCDS DB by Nucleotide ID:NM_025836Re-query CCDS DB by Protein ID:NP_080112Link to BLAST:NP_080112.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080112.1 437 Q9DBG5 437 100% 0 0

Chromosomal Locations for CCDS 28901.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56279732 56280073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56280742 56280867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56281407 56281606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56284133 56284430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56286213 56286295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56286448 56286646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56287794 56287859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGTCTAGCAATGGTACAGATGCGCCTGCCGAAGCTCAAGCTGCTATGGAGGAACCTGTTGTGCAGCCCA
GCGTGGTGGATCGTGTTGCCGGCCTGCCTCTTATCAGTTCCACGTATGGGATGGTGAGCGCCGCCTACAC
CTCCACCAAGGAGAACTACCCCCACGTCAGGACTGTGTGCGATGTGGCTGAGAAAGGCGTCAAGACCCTC
ACCACGGCCGCTGTCAGCACAGCACAGCCCATCCTGTCCAAGCTGGAGCCCCAGATTGCGACGGCCAGTG
AGTATGCACACCGAGGGCTGGACAGACTGCAGGAAAGCCTGCCCATCCTCCAGCAGCCGACTGAGAAGGT
TTTGGCGGATACTAAGGAACTGGTGTCATCTACAGTGTCTGGGGCTCAAGAAATGGTATCTAGCTCAGTG
TCTAGTGCGAAGGAAACAGTGGCCACCCGGGTCACAGGAGCGGTGGATGTGACCCTCGGGGCTGTGCAGA
ACAGCGTGGACAAGACCAAGTCAGCAATGACCAGCGGTGTCCAATCAGTCATGGGCTCACGTGTGGGACA
GATGGTGATTAGCGGAGTGGACAGAGTGCTTGTGAAATCAGAGGCCTGGGCAGACAATCGCCTGCCCCTG
ACAGAGGCGGAGCTAGCTCTGATTGCCACACCCCCGGAGGACTCGGACATGGCCTCACTGCAGCAGCAGC
GACAGGAGCAGAACTACTTTGTCCGGTTGGGCTCTCTCTCTGAGAGGCTGCGCAATCACGCCTATGAACA
CTCCCTCGGCAAGCTGCAGAATGCCAGGCAGAAGGCACAGGAGACGCTGCAGCAGCTAACAAGTGTGCTC
GGCCTGATGGAATCCGTGAAACAGGGTGTGGACCAGAGGCTGGGGGAGGGGCAGGAGAAGCTGCACCAGA
TGTGGCTCAGCTGGAACCAGAAGACCCCACAGGATGCTGAAAAGGACCCAGCTAAGCCAGAGCAGGTGGA
GGCCCGGGCACTCAGCATGTTCAGGGACATCACCCAGCAGCTGCAGAGCATGTGTGTGGCCCTGGGGGCC
AGCATCCAGGGCTTGCCCAGCCACGTCAGGGAGCAGGCACAGCAGGCCCGCAGCCAGGTGAACGACCTTC
AGGCCACCTTCTCCGGCATTCACTCCTTCCAGGACCTCTCAGCCGGCGTTCTTGCCCAAACTCGGGAGCG
CATAGCCAGAGCCCGGGAGGCCCTAGACAACACTGTGGAGTACGTGGCCCAGAACACTCCAGCCATGTGG
CTGGTGGGCCCCTTCGCTCCTGGAATCACAGAGAAAACCCCTGAAGGGAAGTAG

Translation (437 aa):
MSSNGTDAPAEAQAAMEEPVVQPSVVDRVAGLPLISSTYGMVSAAYTSTKENYPHVRTVCDVAEKGVKTL
TTAAVSTAQPILSKLEPQIATASEYAHRGLDRLQESLPILQQPTEKVLADTKELVSSTVSGAQEMVSSSV
SSAKETVATRVTGAVDVTLGAVQNSVDKTKSAMTSGVQSVMGSRVGQMVISGVDRVLVKSEAWADNRLPL
TEAELALIATPPEDSDMASLQQQRQEQNYFVRLGSLSERLRNHAYEHSLGKLQNARQKAQETLQQLTSVL
GLMESVKQGVDQRLGEGQEKLHQMWLSWNQKTPQDAEKDPAKPEQVEARALSMFRDITQQLQSMCVALGA
SIQGLPSHVREQAQQARSQVNDLQATFSGIHSFQDLSAGVLAQTRERIARAREALDNTVEYVAQNTPAMW
LVGPFAPGITEKTPEGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH