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Report for CCDS40623.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40623.1 Public Mus musculus 9 Sdhd 23 108 98 CCDS HistoryNCBI Gene:66925Re-query CCDS DB by CCDS ID:40623.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40623.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000175.5 ENSMUSP00000000175.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000175.5Link to Ensembl Protein Viewer:ENSMUSP00000000175.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000000175Re-query CCDS DB by Protein ID:ENSMUSP00000000175
Original member Current member NCBI NM_025848.3 NP_080124.1 Accepted alive Link to Nucleotide Sequence:NM_025848.3Link to Protein Sequence:NP_080124.1Re-query CCDS DB by Nucleotide ID:NM_025848Re-query CCDS DB by Protein ID:NP_080124Link to BLAST:NP_080124.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080124.1 159 Q9CXV1 159 100% 0 0

Chromosomal Locations for CCDS 40623.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 50597085 50597250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50598761 50598905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50600548 50600664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50603738 50603789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGGCGGTTCTCTTAAAGCTGGGCGTTCTCTGCAGTGGCCAAGGAGCTCGAGCTCTCCTACTCCGAAGCC
GGGTGGTCAGACCCGCTTATGTGTCAGCATTTCTCCAGGACCAGCCTACCCAAGGACGGTGTGGTACCCA
GCACATTCACCTGTCACCAAGCCACCACTCTGGTTCCAAGGCTGCATCTCTCCACTGGACCAGTGAGAGG
GTTGTCAGTGTTCTGCTCTTGGGGCTGATCCCTGCTGGGTACTTGAATCCCTGCTCTGTGGTGGACTACT
CTCTGGCTGCAGCCCTCACCCTGCACAGTCACTGGGGCCTTGGACAAGTGGTTACCGACTACGTTCATGG
GGACACCCTGCCGAAGGCTGCCAGGGCAGGCCTCTTGGCACTCTCAGCTTTGACCTTTGCTGGGCTTTGC
TACTTCAATTACCACGATGTCGGCATCTGCAGAGCGGTTGCCATGCTGTGGAAGCTCTGA

Translation (159 aa):
MAVLLKLGVLCSGQGARALLLRSRVVRPAYVSAFLQDQPTQGRCGTQHIHLSPSHHSGSKAASLHWTSER
VVSVLLLGLIPAGYLNPCSVVDYSLAAALTLHSHWGLGQVVTDYVHGDTLPKAARAGLLALSALTFAGLC
YFNYHDVGICRAVAMLWKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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