NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15218.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15218.1 Public Mus musculus 1 Serpinb11 23 108 98 CCDS HistoryNCBI Gene:66957Re-query CCDS DB by CCDS ID:15218.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15218.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027566.2 ENSMUSP00000027566.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027566.2Link to Ensembl Protein Viewer:ENSMUSP00000027566.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000027566Re-query CCDS DB by Protein ID:ENSMUSP00000027566
Original member Current member NCBI NM_025867.2 NP_080143.1 Accepted alive Link to Nucleotide Sequence:NM_025867.2Link to Protein Sequence:NP_080143.1Re-query CCDS DB by Nucleotide ID:NM_025867Re-query CCDS DB by Protein ID:NP_080143Link to BLAST:NP_080143.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080143.1 388 Q9CQV3 388 100% 0 0

Chromosomal Locations for CCDS 15218.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 107369396 107369563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107370789 107370848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107372154 107372273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107374075 107374192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107376773 107376915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107377505 107377660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107379606 107380007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGGATCCCATCACCACAGCGAGTACTGAATTTTGCCTTGATGTGTTCAAAGAGCTGAGCAGTAACAACG
TGGGAGAAAACATCTTCTTTTCTCCGCTGACTACGTTTTATGCTCTAAGCATGCTTCTCCTGGGTACCAG
GGGAAAGAGTGCTGAGCAAATGGAAAAGGTGCTCCACTATGACAGCTTTTCAGGAGTCTTAAAAGCAAAG
ACGAAAAATTCTTCTGAGTGCAGCCAAGTTGGAGTGATGCATCCTGATTTCAGAGCCCTGATTTCCCACA
TTAACCAACAGAACTCCCTCAGCGTTGCTAACAGAATCTACGGGACGAGGTCAATATCATTCCACAAGCA
ATATGTAAGATGTTGTGAGAAACTGTACCAAGCCAAGCTGCAAACTGTTGATTTTGAACTATCTACAGAA
GAGACAAGGAAAAGTATTAACGCTTGGGTTAAAAATAAAACTAATGGAAAAATCACAAATTTATTTGCAA
AGGGTACAATTGACCCATCCTCGGTCATGGTCCTAGTGAGTGCCATATATTTCAAGGGACAATGGCAAAA
TAAATTCCAAAAAAGAGAGACAGTGAAAGCCCCCTTTCACATGGGTGTGGGTAAAAGTGCAGTTGTGAAT
ATGATGTATCAGACTGGAACATTTAAGCTGGCTATCATAAAGGAGCCAGAGATGCAAGTCCTTGAGCTTC
CCTATGCCAACAACAAACTAAGAATGATCATCCTGCTTCCTGTAGGCACAGCCAGCGTGAGCCAGATAGA
AAAACACCTGAATGTGAAGATGCTTCGAGAGTGGACTAACCCTTCTAACATGGTGGAAAGAGAAGTGGAT
GTTCACATCCCTAAATTCAGTCTTTCAGTAAAATACGACCTAAACACCCTATTGAAATCCCTAGGCATGA
GGGACATCTTCAACGTAGCCAATGCTGATCTCTCTGGAATGTCACCGGACAAGGGCCTATATTTATCTAA
GGTTGTTCACAAGTCATATGTGGATGTCAATGAAGAAGGCACAGAGGCAGCTGCAGCCACTGGGGAGAGT
ATTTCTGTGAAGCGACTCCCTGTCACAGTTCAGTTCACAGCCAATTGTCCTTTCCTGTTCTTTATCTGGG
ATGAGTCTGGCAATATTTTATTTGCTGGCAAGTTTGCTTCTCCATAG

Translation (388 aa):
MDPITTASTEFCLDVFKELSSNNVGENIFFSPLTTFYALSMLLLGTRGKSAEQMEKVLHYDSFSGVLKAK
TKNSSECSQVGVMHPDFRALISHINQQNSLSVANRIYGTRSISFHKQYVRCCEKLYQAKLQTVDFELSTE
ETRKSINAWVKNKTNGKITNLFAKGTIDPSSVMVLVSAIYFKGQWQNKFQKRETVKAPFHMGVGKSAVVN
MMYQTGTFKLAIIKEPEMQVLELPYANNKLRMIILLPVGTASVSQIEKHLNVKMLREWTNPSNMVEREVD
VHIPKFSLSVKYDLNTLLKSLGMRDIFNVANADLSGMSPDKGLYLSKVVHKSYVDVNEEGTEAAAATGES
ISVKRLPVTVQFTANCPFLFFIWDESGNILFAGKFASP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH