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Report for CCDS85423.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85423.1 Public Mus musculus 7 Ctf1 23 108 98 CCDS HistoryNCBI Gene:13019Re-query CCDS DB by CCDS ID:85423.1Re-query CCDS DB by GeneID:13019See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85423.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000206506.1 ENSMUSP00000145586.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206506.1Link to Ensembl Protein Viewer:ENSMUSP00000145586.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206506Re-query CCDS DB by Protein ID:ENSMUSP00000145586
Original member NCBI NM_001301282.1 NP_001288211.1 Updated not alive Link to Nucleotide Sequence:NM_001301282.1Link to Protein Sequence:NP_001288211.1Re-query CCDS DB by Nucleotide ID:NM_001301282Re-query CCDS DB by Protein ID:NP_001288211
Current member NCBI NM_001301282.2 NP_001288211.1 Accepted alive Link to Nucleotide Sequence:NM_001301282.2Link to Protein Sequence:NP_001288211.1Re-query CCDS DB by Nucleotide ID:NM_001301282Re-query CCDS DB by Protein ID:NP_001288211Link to BLAST:NP_001288211.1

Chromosomal Locations for CCDS 85423.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127713018 127713021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127713925 127714043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127717004 127717471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGGAAGACCACCAGACTGACTCCTCAATCTCATTCCTACCCCATTTGGAGGCCAAGATCCGCCAGACAC
ACAACCTTGCCCGCCTCCTGACCAAATATGCAGAACAACTTCTGGAGGAATACGTGCAGCAACAGGGAGA
GCCCTTTGGGCTGCCGGGCTTCTCACCACCGCGGCTGCCGCTGGCCGGCCTGAGTGGCCCGGCTCCGAGC
CATGCAGGGCTACCGGTGTCCGAGCGGCTGCGGCAGGATGCAGCCGCCCTGAGTGTGCTGCCCGCGCTGT
TGGATGCCGTCCGCCGCCGCCAGGCGGAGCTGAACCCGCGCGCCCCGCGCCTGCTGCGGAGCCTGGAGGA
CGCAGCCCGCCAGGTTCGGGCCCTGGGCGCCGCGGTGGAGACAGTGCTGGCCGCGCTGGGCGCTGCAGCC
CGCGGGCCCGGGCCAGAGCCCGTCACCGTCGCCACCCTCTTCACGGCCAACAGCACTGCAGGCATCTTCT
CAGCCAAGGTGCTGGGGTTCCACGTGTGCGGCCTCTATGGCGAGTGGGTGAGCCGCACAGAGGGCGACCT
GGGCCAGCTGGTGCCAGGGGGCGTCGCCTGA

Translation (196 aa):
MEDHQTDSSISFLPHLEAKIRQTHNLARLLTKYAEQLLEEYVQQQGEPFGLPGFSPPRLPLAGLSGPAPS
HAGLPVSERLRQDAAALSVLPALLDAVRRRQAELNPRAPRLLRSLEDAARQVRALGAAVETVLAALGAAA
RGPGPEPVTVATLFTANSTAGIFSAKVLGFHVCGLYGEWVSRTEGDLGQLVPGGVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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