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Report for CCDS39600.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39600.1 Public Mus musculus 6 Mkrn2 23 108 98 CCDS HistoryNCBI Gene:67027Re-query CCDS DB by CCDS ID:39600.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39600.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000449.8 ENSMUSP00000000449.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000449.8Link to Ensembl Protein Viewer:ENSMUSP00000000449.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000000449Re-query CCDS DB by Protein ID:ENSMUSP00000000449
Original member Current member NCBI NM_023290.3 NP_075779.2 Accepted alive Link to Nucleotide Sequence:NM_023290.3Link to Protein Sequence:NP_075779.2Re-query CCDS DB by Nucleotide ID:NM_023290Re-query CCDS DB by Protein ID:NP_075779Link to BLAST:NP_075779.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075779.2 416 Q9ERV1 416 100% 0 0

Chromosomal Locations for CCDS 39600.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 115601988 115602013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115609581 115609709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115610519 115610700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115611635 115611939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115613327 115613541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115614575 115614685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115617298 115617442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115617594 115617731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGAGCACCAAGCAGGTCACCTGCAGGTATTTTATGCATGGCGTATGTCGCGAAGGCAGCCAGTGCCTGT
TCTCACATGACTTGGCGAACAGCAAGCCGTCCACCATCTGCAAATACTACCAGAAGGGCTACTGCGCCTA
TGGTGCACGCTGCAGATATGATCATACAAAGCCCCCAGCTGCAGCAGGTGGAGCTGTGGGTCCTGCACCC
AACCCTTCGCCCTCCTCAGGCCTGCATAGTCCTCACCCTTCTCCTGACATTGCCACATCTGTTATGAGGA
CACATTCGAATGAACCTGGAAAACGGGAGAAGAAGACGCTGGTGCTCAGAGACCGCAATCTCACTGGTCT
GGCTGAAGATAAGACTCCTCCAAGCAAAGTGAATAATCCAGGTGGCTGCAGTGACCCTCAGACCAGCCCA
GAGATGAAGCCCCATTCCTACCTAGATGCCATCAGGACTGGCCTGGATGACTTGGAGGCCAGCAGCTCCT
ACAGCAATGAGCCGCAGTTGTGCCCCTATGCTGCCGCTGGGGAGTGTCGCTTTGGAGATGCCTGTGTCTA
CCTGCATGGGGACATGTGTGAGATCTGCAGGCTTCAAGTCCTCCACCCCTTTGACCCAGAACAAAGGAAA
GCTCACGAGAAGATGTGTATGTCGACATTTGAACATGAGATGGAAAAGGCGTTTGCCTTCCAGGCGAGCC
AGGACAAAGTGTGCAGCATCTGCATGGAGGTGATCCTGGAGAAAGCATCTGCTTCTGAAAGGAGGTTTGG
CATTCTCTCCAACTGCAGCCACACCTACTGCCTGTCCTGCATCCGTCAATGGAGATGTGCCAAGCAGTTT
GAAAACCCAATCATAAAGTCTTGTCCAGAGTGCCGTGTGATATCAGAGTTTGTAATTCCAAGTGTGTATT
GGGTAGAAGATCAGAATAAAAAGAATGAATTAATTGAAGCTTTCAAACAGGGAATGGGGAAGAAGGCATG
CAAATACTTTGAACAAGGCAAGGGGACCTGCCCCTTTGGAAGCAAGTGCCTTTACCGTCATGCTTACCCT
GATGGGCGGCTGGCAGAGCCAGAGAAACCTCGGAAGCAGCTAAGCTCTGAAGGCACTGTGAGGTTCTTTA
ACTCAGTTCGGCTTTGGGATTTTATCGAGAACCGAGAAACCCGGCAAGTCCCCAGCACTGACGATGTGGA
TGTGACAGAGCTAGGAGACCTCTTCATGCACCTTTCTGGAGTAGAATCATCAGAACCCTAG

Translation (416 aa):
MSTKQVTCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGARCRYDHTKPPAAAGGAVGPAP
NPSPSSGLHSPHPSPDIATSVMRTHSNEPGKREKKTLVLRDRNLTGLAEDKTPPSKVNNPGGCSDPQTSP
EMKPHSYLDAIRTGLDDLEASSSYSNEPQLCPYAAAGECRFGDACVYLHGDMCEICRLQVLHPFDPEQRK
AHEKMCMSTFEHEMEKAFAFQASQDKVCSICMEVILEKASASERRFGILSNCSHTYCLSCIRQWRCAKQF
ENPIIKSCPECRVISEFVIPSVYWVEDQNKKNELIEAFKQGMGKKACKYFEQGKGTCPFGSKCLYRHAYP
DGRLAEPEKPRKQLSSEGTVRFFNSVRLWDFIENRETRQVPSTDDVDVTELGDLFMHLSGVESSEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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