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Report for CCDS4653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4653.1 Public Homo sapiens 6 GPX5 24 110 108 CCDS HistoryNCBI Gene:2880Re-query CCDS DB by CCDS ID:4653.1Re-query CCDS DB by GeneID:2880See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4653.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000469384.1 ENSP00000419935.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000469384.1Link to Ensembl Protein Viewer:ENSP00000419935.1Re-query CCDS DB by Nucleotide ID:ENST00000469384Re-query CCDS DB by Protein ID:ENSP00000419935
Original member Current member NCBI NM_003996.3 NP_003987.2 Accepted alive Link to Nucleotide Sequence:NM_003996.3Link to Protein Sequence:NP_003987.2Re-query CCDS DB by Nucleotide ID:NM_003996Re-query CCDS DB by Protein ID:NP_003987Link to BLAST:NP_003987.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003987.2 100 O75715-2 100 100% 0 0

Chromosomal Locations for CCDS 4653.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 28526014 28526100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28529451 28529604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28532321 28532382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (303 nt):
ATGACTACACAGTTAAGGGTCGTCCATCTGCTTCCCCTTCTCCTAGCCTGCTTTGTGCAAACAAGTCCCA
AGCAGGAGAAGATGAAGATGGATTGCCACAAAGACGAGAAAGGCACCATCTATGACTATGAGGCCATCGC
ACTTAATAAGAATGAATATGTTTCCTTCAAGCAGTATGTGGGCAAGCACATCCTCTTCGTCAACGTGGCC
ACCTACTGTGGTCTGACAGCGCAATATCCTGGTATGTCCGTCCAGGGGGAGGATTTGTACCTAGTTTCCA
GCTTTTTGAGAAAGGGGATGTGA

Translation (100 aa):
MTTQLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVA
TYCGLTAQYPGMSVQGEDLYLVSSFLRKGM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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