NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21494.1 Public Mus musculus 7 Lipt2 23 108 98 CCDS HistoryNCBI Gene:67164Re-query CCDS DB by CCDS ID:21494.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21494.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032967.3 ENSMUSP00000032967.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032967.3Link to Ensembl Protein Viewer:ENSMUSP00000032967.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000032967Re-query CCDS DB by Protein ID:ENSMUSP00000032967
Original member Current member NCBI NM_026010.2 NP_080286.2 Accepted alive Link to Nucleotide Sequence:NM_026010.2Link to Protein Sequence:NP_080286.2Re-query CCDS DB by Nucleotide ID:NM_026010Re-query CCDS DB by Protein ID:NP_080286Link to BLAST:NP_080286.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080286.2 231 Q9D009 231 100% 0 0

Chromosomal Locations for CCDS 21494.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100159282 100159747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100160174 100160403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (696 nt):
ATGTCGCTGCCTGTGGTCCGGCTCGTTTGGCTTGGTCGGGTGCACTACTCGGAGCTGCTGGCGTTGCAGG
AGCATTGGCTACGGCGGCTACAGGCAGACCCTCGCCCTGGGACCCTGTCGGGGACCAAAGCGGGTGTGCT
CTTGGTCTGCGAGCCAGCGGGGCCCGTATACACGGGCGGGCTACGCGGTGGCCTGACACCCGAGGAGACT
ACGCGGCTGAGGGCCTTGGGCGCCGAGGTGCGCGCCACCGGCCGCGGCGGCCTGGCCACTTTCCACGGCC
CGGGCCAGTTGCTCTGCCACCCGGTGCTTGACTTGCGGCTCCTAGGCCTGCGCCTGCGCACCCACGTGGC
GGCGCTGGAGGCGTGCGCCGTGCGACTGTGCGAACTTCGGGGCCTGCAGGGCGCCCGCGCGCGGCCGCCG
CCCTACACTGGCGTCTGGCTGGGGGAGCGCAAGATCTGCGCGATCGGAGTCCGCTGTGGAAGACACATCA
CGTCCCACGGCTTGGCTCTGAACTGTTCAACCGACCTCACATGGTTTGAGCACATTGTGCCTTGTGGACT
GGTTGGAACTGGAGTCACTTCCCTGAGTGAGGCGCTTCAAAGACTTGTCACTGTGGATGAAGTAATGCCA
TCATTCCTTGTGGCATTCAAGGAGACTTTCAAGTGCACGTTAATCTCTGAGGACAGCCCCAGCTGA

Translation (231 aa):
MSLPVVRLVWLGRVHYSELLALQEHWLRRLQADPRPGTLSGTKAGVLLVCEPAGPVYTGGLRGGLTPEET
TRLRALGAEVRATGRGGLATFHGPGQLLCHPVLDLRLLGLRLRTHVAALEACAVRLCELRGLQGARARPP
PYTGVWLGERKICAIGVRCGRHITSHGLALNCSTDLTWFEHIVPCGLVGTGVTSLSEALQRLVTVDEVMP
SFLVAFKETFKCTLISEDSPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH