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Report for CCDS15313.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15313.1 Public Mus musculus 1 Ube2t 23 108 98 CCDS HistoryNCBI Gene:67196Re-query CCDS DB by CCDS ID:15313.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15313.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027687.7 ENSMUSP00000027687.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027687.7Link to Ensembl Protein Viewer:ENSMUSP00000027687.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027687Re-query CCDS DB by Protein ID:ENSMUSP00000027687
Original member Current member NCBI NM_001278115.1 NP_001265044.1 Accepted alive Link to Nucleotide Sequence:NM_001278115.1Link to Protein Sequence:NP_001265044.1Re-query CCDS DB by Nucleotide ID:NM_001278115Re-query CCDS DB by Protein ID:NP_001265044Link to BLAST:NP_001265044.1
Original member Current member NCBI NM_026024.3 NP_080300.1 Accepted alive Link to Nucleotide Sequence:NM_026024.3Link to Protein Sequence:NP_080300.1Re-query CCDS DB by Nucleotide ID:NM_026024Re-query CCDS DB by Protein ID:NP_080300Link to BLAST:NP_080300.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265044.1 204 Q9CQ37 204 100% 0 0
NP_080300.1 204 Q9CQ37 204 100% 0 0

Chromosomal Locations for CCDS 15313.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 134967790 134967898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134969241 134969310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134971250 134971355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134971901 134971999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134972106 134972189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134973800 134973946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGCAGAGAGCCTCACGCCTGAAGAAGGAACTGCACATGCTAGCCATCGAACCTCCCCCGGGCATCACGT
GCTGGCAGGAAAAGGATCAAGTGGCTGATTTGCGAGCTCAAATACTAGGTGGAGCTAATACACCTTATGA
GAAAGGTGTTTTCACACTGGAAGTTATCATTCCTGAGAGGTACCCATTTGAACCTCCACAGGTCCGATTT
CTAACTCCAATCTATCATCCAAACATTGATTCTAGTGGAAGGATTTGTCTAGATATTCTCAAATTGCCAC
CAAAGGGTGCATGGAGACCATCCCTCAACATTGCCACTGTATTGACCTCTATTCAGCTGCTCATGGCAGA
ACCCAATCCTGATGACCCACTAATGGCTGACATTTCTTCAGAATTTAAATATAACAAGATAGCTTTTCTC
AAGAAAGCCAAGCAGTGGACAGAGGCTCATGCAAGACAGAAACAAAAGGCTGATGAAGAGGAGCTAGGCA
CCTCATCAGAAGTTGGTGACTCTGAGGAAAGCCATTCCACACAGAAAAGGAAGGCCAGGCCATTAGGAGG
AATGGAAAAAAAGTTTTCCCCTGACGTTCAGAGAGTCTATCCTGGTCCCTCTTAG

Translation (204 aa):
MQRASRLKKELHMLAIEPPPGITCWQEKDQVADLRAQILGGANTPYEKGVFTLEVIIPERYPFEPPQVRF
LTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNKIAFL
KKAKQWTEAHARQKQKADEEELGTSSEVGDSEESHSTQKRKARPLGGMEKKFSPDVQRVYPGPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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