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Report for CCDS21042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21042.1 Public Mus musculus 7 Med29 23 108 98 CCDS HistoryNCBI Gene:67224Re-query CCDS DB by CCDS ID:21042.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21042.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003536.8 ENSMUSP00000003536.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003536.8Link to Ensembl Protein Viewer:ENSMUSP00000003536.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000003536Re-query CCDS DB by Protein ID:ENSMUSP00000003536
Original member NCBI NM_026042.3 NP_080318.2 Updated not alive Link to Nucleotide Sequence:NM_026042.3Link to Protein Sequence:NP_080318.2Re-query CCDS DB by Nucleotide ID:NM_026042Re-query CCDS DB by Protein ID:NP_080318
Current member NCBI NM_026042.4 NP_080318.2 Accepted alive Link to Nucleotide Sequence:NM_026042.4Link to Protein Sequence:NP_080318.2Re-query CCDS DB by Nucleotide ID:NM_026042Re-query CCDS DB by Protein ID:NP_080318Link to BLAST:NP_080318.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080318.2 199 Q9DB91 199 100% 0 0

Chromosomal Locations for CCDS 21042.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28386782 28387024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28390812 28390896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28391090 28391148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28392451 28392663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGGCTGCGCCCCAGCCACAGGCTGCAGCGGTTTCCTCTGCGTCTGGTGTGTCAGGCCCGGGTTCTGCCG
GGGGTCCGGGTCCCCAGCAACAGCCACAACCGACCCAGTTGGTGGGTTCTGCCCAGAGCGGGCTCCTGCA
GCAGCAGCAGCAGGACTTCGATCCTGTGCAGCGCTACAAGATGCTCATCCCGCAACTGAAGGAGAGTCTC
CAGACTTTGATGAAGGTTGCAGCCCAGAATCTGATTCAGAACACTAACATTGACAATGGACAGAAGAGCA
GTGACGCACCCTTGCAGCGCTTTGACAAGTGTTTGGAGGAGTTTTACGCACTCTGTGATCAGCTGGAACT
CTGCTTGCGCCTGGCCCACGAGTGCCTTTCACAGAGCTGTGACAGCGCCAAACACTCTCCAACACTGGTA
CCCACAGCCACAAAGCCAGATGCAGTGCAGCCAGACAGTCTGCCCTACCCACAGTACCTGGCTGTCATCA
AAGCCCAGATCACCTGTGCCAAAGACATTCATACTGCCCTGCTGGACTGTGCCAACAAGGTCACTGGAAA
GACTACTGCACCCTCTACTGGCCCTGGGGGCAGCCTCTGA

Translation (199 aa):
MAAPQPQAAAVSSASGVSGPGSAGGPGPQQQPQPTQLVGSAQSGLLQQQQQDFDPVQRYKMLIPQLKESL
QTLMKVAAQNLIQNTNIDNGQKSSDAPLQRFDKCLEEFYALCDQLELCLRLAHECLSQSCDSAKHSPTLV
PTATKPDAVQPDSLPYPQYLAVIKAQITCAKDIHTALLDCANKVTGKTTAPSTGPGGSL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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