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Report for CCDS17230.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17230.1 Public Mus musculus 3 Zc2hc1a 23 108 98 CCDS HistoryNCBI Gene:67306Re-query CCDS DB by CCDS ID:17230.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17230.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051064.8 ENSMUSP00000054734.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051064.8Link to Ensembl Protein Viewer:ENSMUSP00000054734.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000051064Re-query CCDS DB by Protein ID:ENSMUSP00000054734
Original member NCBI NM_173181.3 NP_775273.1 Updated not alive Link to Nucleotide Sequence:NM_173181.3Link to Protein Sequence:NP_775273.1Re-query CCDS DB by Nucleotide ID:NM_173181Re-query CCDS DB by Protein ID:NP_775273
Current member NCBI NM_173181.4 NP_775273.1 Accepted alive Link to Nucleotide Sequence:NM_173181.4Link to Protein Sequence:NP_775273.1Re-query CCDS DB by Nucleotide ID:NM_173181Re-query CCDS DB by Protein ID:NP_775273Link to BLAST:NP_775273.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775273.1 324 Q8BJH1-1 324 100% 0 0

Chromosomal Locations for CCDS 17230.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 7503512 7503527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 7516456 7516532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 7518364 7518480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 7524126 7524267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 7526269 7526417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 7528030 7528129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 7528585 7528684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 7539076 7539183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 7551383 7551548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGGACGGACTGGAAGAAAATGGAAGTGTTGTGCAAGTTGGAGACTTGTTGCCCTGCAAGATTTGCGGAA
GGACCTTCTTCCCGTTGGCTCTGAAAAAACATGGACCTATTTGCCAGAAAACTGCCACTAAGAAGCGGAA
GACTTTTGATTCCAGCCGGCAGAGAGCTGAAGGGACTGATATTCCCACGGTCAAACCTCTCAAACCCAGG
CCAGAACCACCAAAGAAGCCATCCAATTGGAGACGAAAGCACGAGGAGTTCATTGCCACCATCAGAGCAG
CGAAAGGCCTGGACCAGGCTCTCAAGGAGGGCGGCAAGCTGCCTCCTCCTCCTCCGCCCTCTTACGACCC
AGATTACATCCAGTGTCCGTATTGCCAGAGGAGATTCAATGAAAATGCAGCCGACAGACATATAAACTTT
TGTAAAGAACAGGCAGCACGTATTAGTAATAAGGGCAAATTTTCTACTGATTCTAAAGGAAAGCCAGCTT
CTCGGCCACAGTATAAGCCGTCTCCGCTTAAAAAATCAAATCCTCCTGGAATTCCATCATCAGGATCCTC
CCGACTGCCACAGCCAAGTACTACTAGCAAAACAATTGTAGGTGTGCCCACGGGTAAAGCATCTTCAGTT
AACAGTCCTTTGGGAAACAAACCTCAGACCTTATCTCCTTCTCATAGAGCGATAGCAGCCCCCCAGGCAG
GAGCTAACACCAAGGCTAGAAATACCACACCTCCTAGTTTGGCAAGAAATTCTGTGGCAGGGGTGCTTAC
CAACAAAAGAAAGACTTTGACTGAGAACTATGCAGCCAGGCCAGATGGAGACTATACATCTTCAGTTAAT
GGTGGAAACAGTAAAGGCATCGAGGGAAATTCATCTGGACACTTACCAAAATTCTGCCATGAGTGTGGGA
CAAAGTACCCTGTTGAGTGGGCAAAGTTCTGCTGTGAATGTGGCATTCGAAGAATGATTCTGTGA

Translation (324 aa):
MDGLEENGSVVQVGDLLPCKICGRTFFPLALKKHGPICQKTATKKRKTFDSSRQRAEGTDIPTVKPLKPR
PEPPKKPSNWRRKHEEFIATIRAAKGLDQALKEGGKLPPPPPPSYDPDYIQCPYCQRRFNENAADRHINF
CKEQAARISNKGKFSTDSKGKPASRPQYKPSPLKKSNPPGIPSSGSSRLPQPSTTSKTIVGVPTGKASSV
NSPLGNKPQTLSPSHRAIAAPQAGANTKARNTTPPSLARNSVAGVLTNKRKTLTENYAARPDGDYTSSVN
GGNSKGIEGNSSGHLPKFCHECGTKYPVEWAKFCCECGIRRMIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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